BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1439024	116 (1.180)	12 (0.130)	7/146	NT	10.3%	intergenic (+22/+218)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein
*	?	USA300TCH1516_ALE	= 1439047	104 (1.160)	12 (0.130)	7/146	NT	10.3%	intergenic (+45/+195)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein

Only 100 of 133 total aligned reads displayed.

AAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTA  >  USA300TCH1516_ALE/1438957‑1439135

aaaGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGAc                                                                                          <  1:3700634/91‑1 (MQ=255)

    cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgg                                                                                      >  1:390260‑M2/1‑87 (MQ=255)

     gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                     >  1:1953285‑M2/1‑86 (MQ=255)

     gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                     >  1:1953174‑M2/1‑86 (MQ=255)

     gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg                                                                                     <  1:1635212‑M2/91‑6 (MQ=255)

       cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                   <  1:1094702‑M2/91‑8 (MQ=255)

       cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga                                                                                   >  1:2185383‑M2/1‑84 (MQ=255)

         aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                 <  1:702583/91‑1 (MQ=255)

         aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                 >  1:502808/1‑91 (MQ=255)

          tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                >  1:2355082/1‑91 (MQ=255)

           cGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttt                                                                               >  1:3844864/1‑91 (MQ=255)

             ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt                                                                             <  1:933648/91‑1 (MQ=255)

              tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa                                                                            >  1:451213/1‑91 (MQ=255)

               aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                                           >  1:265050/1‑91 (MQ=255)

               aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt                                                                           <  1:2563615/91‑1 (MQ=255)

                aGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATg                                                                          <  1:1420784/91‑1 (MQ=255)

                 gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                         >  1:1460876/1‑91 (MQ=255)

                 gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                         <  1:851647/91‑1 (MQ=255)

                 gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                         <  1:1880603/91‑1 (MQ=255)

                  aCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCa                                                                        >  1:3581651/1‑91 (MQ=255)

                   cAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAt                                                                       <  1:675880/91‑1 (MQ=255)

                    aaCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAtt                                                                      >  1:1140463/1‑91 (MQ=255)

                     aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                     <  1:1834190/91‑1 (MQ=255)

                      cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                    <  1:394197/91‑1 (MQ=255)

                      cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                    <  1:3364298/91‑1 (MQ=255)

                      cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                    >  1:2983855/1‑91 (MQ=255)

                       tCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtata                                                                   <  1:299377/91‑1 (MQ=255)

                        cATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg                                                                  >  1:859827/1‑91 (MQ=255)

                           tattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATg                                                               >  1:1871761/1‑91 (MQ=255)

                            attaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGa                                                              >  1:1204506/1‑91 (MQ=255)

                             ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc                                                             <  1:429967/91‑1 (MQ=255)

                             ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc                                                             >  1:1459841/1‑91 (MQ=255)

                             ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc                                                             <  1:932776/91‑1 (MQ=255)

                              taATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACt                                                            <  1:1259061/91‑1 (MQ=255)

                                aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                          <  1:2633783/91‑1 (MQ=255)

                                aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                          >  1:1019136/1‑91 (MQ=255)

                                  gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                        <  1:225821/91‑1 (MQ=255)

                                  gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                        >  1:3613675/1‑91 (MQ=255)

                                  gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                        >  1:3613919/1‑91 (MQ=255)

                                  gATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAg                                                        >  1:288065/1‑91 (MQ=255)

                                    tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa                                                      <  1:279739/91‑1 (MQ=255)

                                     aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                     >  1:4099503/1‑91 (MQ=255)

                                     aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                     >  1:1273749/1‑91 (MQ=255)

                                      cAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaaa                                                    >  1:2360864/1‑91 (MQ=255)

                                       aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc                                                   <  1:426903/91‑1 (MQ=255)

                                        aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                                                  >  1:4008159/1‑91 (MQ=255)

                                        aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                                                  >  1:4008309/1‑91 (MQ=255)

                                        aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa                                                  >  1:1047356/1‑91 (MQ=255)

                                          ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                >  1:364292/1‑91 (MQ=255)

                                          ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                <  1:2425577/91‑1 (MQ=255)

                                           taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc                                               >  1:712636/1‑91 (MQ=255)

                                            aaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCt                                              >  1:2369297/1‑91 (MQ=255)

                                             aaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                                             <  1:3120163/91‑1 (MQ=255)

                                               aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                                           >  1:2520714/1‑91 (MQ=255)

                                               aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                                           >  1:160557/1‑91 (MQ=255)

                                               aataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTgg                                           >  1:328750/1‑91 (MQ=255)

                                                ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtagat                                          >  1:3879900/1‑87 (MQ=255)

                                                ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtagat                                          >  1:3878556/1‑87 (MQ=255)

                                                ataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGa                                          >  1:281035/1‑91 (MQ=255)

                                                 taaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTCGAAAACATGCTTGGAc                                         >  1:110358/1‑91 (MQ=255)

                                                  aaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACa                                        <  1:3515742/91‑1 (MQ=255)

                                                    aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtct                                      <  1:1407115‑M2/91‑53 (MQ=255)

                                                    aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata                                      >  1:3890660/1‑91 (MQ=255)

                                                    aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACata                                      >  1:3665463/1‑91 (MQ=255)

                                                     cAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACatat                                     >  1:1212529/1‑91 (MQ=255)

                                                       aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                   <  1:2343359/91‑1 (MQ=255)

                                                       aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                   >  1:2939494/1‑91 (MQ=255)

                                                        aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                  <  1:3484292/91‑1 (MQ=255)

                                                         gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                 <  1:2213028/91‑1 (MQ=255)

                                                         gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                 <  1:1172301/91‑1 (MQ=255)

                                                          tAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTATATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActct                                <  1:3301878/91‑1 (MQ=255)

                                                            aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                              >  1:3095783/1‑91 (MQ=255)

                                                              ccccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                            >  1:3091074/1‑91 (MQ=255)

                                                              ccccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                            >  1:3090973/1‑91 (MQ=255)

                                                              ccccGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                            <  1:1793771/91‑1 (MQ=255)

                                                               cccGAAGCACAGAAAATTATACTGTGACtcggggaatactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtc                           <  1:1987328‑M2/91‑64 (MQ=255)

                                                                 cGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgc                         <  1:3980929‑M2/91‑66 (MQ=255)

                                                                 cGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAg                         >  1:2034281/1‑91 (MQ=255)

                                                                  gAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAgg                        <  1:2630173/91‑1 (MQ=255)

                                                                   aaGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctt                       <  1:1133202‑M2/91‑68 (MQ=255)

                                                                   aaGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGga                       <  1:1413019/91‑1 (MQ=255)

                                                                    aGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaa                      >  1:2617847/1‑91 (MQ=255)

                                                                    aGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaa                      >  1:906935/1‑91 (MQ=255)

                                                                      cacaGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttat                    <  1:3205343‑M2/91‑71 (MQ=255)

                                                                      cacaGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttat                    <  1:2611755‑M2/91‑71 (MQ=255)

                                                                      cacaGAAAATTAAACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttat                    <  1:3196278‑M2/91‑71 (MQ=255)

                                                                       acaGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgctttata                   <  1:2491299‑M2/91‑72 (MQ=255)

                                                                        caGAAAATTATACTGTGACtcggggattacttagtttatttttattttgtatcattaataatgagttgtcttaacgattgtcgatttataa                  <  1:4113995‑M2/91‑73 (MQ=255)

                                                                        caGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAc                  <  1:3939932/91‑1 (MQ=255)

                                                                        caGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAc                  <  1:3940825/91‑1 (MQ=255)

                                                                        caGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAc                  <  1:873656/91‑1 (MQ=255)

                                                                         aGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                 >  1:3834040/1‑91 (MQ=255)

                                                                             aaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcac             <  1:1801748/91‑1 (MQ=255)

                                                                             aaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcac             <  1:3276864/91‑1 (MQ=255)

                                                                             aaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcac             <  1:1802341/91‑1 (MQ=255)

                                                                                 ataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt         <  1:1266646/91‑1 (MQ=255)

                                                                                 ataCTGTCACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttt         <  1:2067393/91‑1 (MQ=255)

                                                                                  taCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtttt        >  1:1516290/1‑91 (MQ=255)

                                                                                   aCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAttttt       <  1:1281353/91‑1 (MQ=255)

                                                                                        gACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtta  <  1:1579656/91‑1 (MQ=255)

AAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTA  >  USA300TCH1516_ALE/1438957‑1439135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.