| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1453877 = | 81 (0.820) | 14 (0.160) | 8/146 | NT | 15.5% | coding (45/2799 nt) | odhA | 2‑oxoglutarate dehydrogenase E1 component |
| ? | USA300TCH1516_ALE | 1453904 = | 79 (0.880) | coding (18/2799 nt) | odhA | 2‑oxoglutarate dehydrogenase E1 component | |||||
TAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1453973‑1453877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacttcTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTA > USA300TCH1516_ALE/1453904‑1453993 TAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTA < 1:499880/91‑1 GTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAA > 1:2937454/1‑91 TGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAAC < 1:2330863/91‑1 GATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACT > 1:3547714/1‑91 GATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACT < 1:3687330/91‑1 ATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACTT < 1:849835/91‑1 ATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACTT > 1:2002839/1‑91 ATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACTT > 1:1665879/1‑91 GAAAAGAAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAA > 1:653301/1‑91 AAGAAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAA > 1:3150809/1‑91 AGAAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAAT > 1:1599288/1‑91 AAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACGAAAATGTTGAAACGCTTACAATGTAATAATAT > 1:3527486/1‑91 AAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATAT > 1:525933/1‑91 AAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATAT > 1:579995/1‑91 AAGTTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATAT > 1:525632/1‑91 TTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCAC > 1:3307141/1‑91 TTTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCAC > 1:3306805/1‑91 TTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACT > 1:1807352/1‑91 TTCAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACT > 1:3311541/1‑91 CAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTAT > 1:2527247/1‑91 CAGAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTAT > 1:462581/1‑91 GAGGCTCCTGTAAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTT > 1:3941316/1‑91 AAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTT < 1:1360114/91‑1 AAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTT > 1:2632613/1‑91 AAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTT > 1:3584852/1‑91 AAACTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTT > 1:2890470/1‑91 AAACTTCTTTTCTTCCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTT > 1:3619965/1‑91 CTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAA < 1:2875237/91‑1 CTTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAA < 1:1123229/91‑1 TTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAG < 1:481681/91‑1 TTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAG < 1:790891/91‑1 TTCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAG < 1:821270/91‑1 TCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGT > 1:1831588/1‑91 TCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGT > 1:1831471/1‑91 TCTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGT > 1:3110414/1‑91 CTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTA > 1:2717459/1‑91 TAGTGATATTATTACATTGTAAGCGTTTCAACATTTTTGTGGAGGGTGTAAAATGACTAACGAAAGAAAAGAAGTTTCAGAGGCTCCTGTAAACTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1453973‑1453877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacttcTTTTCTTTCGTTAGTCATTTTACACCCTCCACAAAAATGTTGAAACGCTTACAATGTAATAATATCACTATTTAGTTATTTGTTAAAGTA > USA300TCH1516_ALE/1453904‑1453993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |