| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1454597 = | 138 (1.400) | 9 (0.100) | 5/146 | NT | 7.3% | coding (964/1356 nt) | arlS | Signal transduction histidine‑protein kinase ArlS |
| ? | USA300TCH1516_ALE | 1454633 = | 102 (1.140) | coding (928/1356 nt) | arlS | Signal transduction histidine‑protein kinase ArlS | |||||
TACTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1454692‑1454597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCA > USA300TCH1516_ALE/1454633‑1454722 TACTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTC > 1:2715260/1‑91 ACTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCA > 1:1007721/1‑91 CTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCAT < 1:4074529/91‑1 CTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCAT > 1:3609056/1‑91 CTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCAT < 1:2009776/91‑1 TTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCATT < 1:2080247/91‑1 TAATGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCA > 1:807401/1‑91 TAATGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCA > 1:3170471/1‑91 AATGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAA > 1:1223942/1‑91 ATGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTGAAG > 1:3212736/1‑91 ATGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAG > 1:2575405/1‑91 TGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGT > 1:1011466/1‑91 TGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGT > 1:1013886/1‑91 TGATGAAATTCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGT > 1:1473851/1‑91 TCGCTCGCGAATACACTCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCG > 1:449183/1‑91 TCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATAC < 1:2610567/91‑1 TCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATAC < 1:3884455/91‑1 TCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATAC > 1:3516348/1‑91 CATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACG > 1:3285624/1‑91 CATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACG < 1:2925585/91‑1 CATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACG < 1:2674016/91‑1 ATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAGTTCTTCGACTAATTTTATGATACGA > 1:3871051/1‑91 TTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAT < 1:1927652/91‑1 TTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAT < 1:1189906/91‑1 TTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAT < 1:4048628/91‑1 TTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAT > 1:1177478/1‑91 TTAATATGCACGGTCTGTGCTTCAGAAGAAATATCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAT < 1:3546342/91‑1 TAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATT > 1:2807161/1‑91 TAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATT > 1:3839429/1‑91 TAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATT < 1:1936580/91‑1 ATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCA > 1:169113/1‑91 ATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCA < 1:2140400/91‑1 ATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCA < 1:2141788/91‑1 TACTTGAATTGACTAAAGGAGATGTAAATGACATTTCTTCTGAAGCACAGACCGTGCATATTAATGATGAAATTCGCTCGCGAATACACTCATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1454692‑1454597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCA > USA300TCH1516_ALE/1454633‑1454722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |