BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1454597 =	138 (1.400)	9 (0.100)	5/146	NT	7.3%	coding (964/1356 nt)	arlS	Signal transduction histidine‑protein kinase ArlS
*	?	USA300TCH1516_ALE	1454633 =	102 (1.140)	9 (0.100)	5/146	NT	7.3%	coding (928/1356 nt)	arlS	Signal transduction histidine‑protein kinase ArlS

Only 100 of 153 total aligned reads displayed.

CTAGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCAT  >  USA300TCH1516_ALE/1454543‑1454723

cTAGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAat                                                                                            >  1:342990/1‑91 (MQ=255)

cTAGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAat                                                                                            >  1:1535096/1‑91 (MQ=255)

 tAGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAata                                                                                           >  1:2211845/1‑91 (MQ=255)

  aGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAatat                                                                                          >  1:95595/1‑91 (MQ=255)

  aGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAatat                                                                                          >  1:4146939/1‑91 (MQ=255)

    aTTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGc                                                                                        >  1:3188960/1‑91 (MQ=255)

    aTTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGc                                                                                        <  1:1475103/91‑1 (MQ=255)

     tttttAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCa                                                                                       <  1:1657761/91‑1 (MQ=255)

      ttttAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCAc                                                                                      <  1:1851/91‑1 (MQ=255)

       tttAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACg                                                                                     >  1:1657041/1‑91 (MQ=255)

        ttAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACgg                                                                                    <  1:3807927/91‑1 (MQ=255)

        ttAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACgg                                                                                    <  1:758240/91‑1 (MQ=255)

        ttAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACgg                                                                                    >  1:2198231/1‑91 (MQ=255)

         tAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGt                                                                                   >  1:3811683/1‑91 (MQ=255)

          aGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTc                                                                                  >  1:1948181/1‑91 (MQ=255)

          aGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTc                                                                                  >  1:1490533/1‑91 (MQ=255)

          aGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTc                                                                                  <  1:2933689/91‑1 (MQ=255)

           gATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCt                                                                                 <  1:3259360/91‑1 (MQ=255)

             tGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCtgt                                                                               <  1:2742799/91‑1 (MQ=255)

               tCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGc                                                                             <  1:1638716/91‑1 (MQ=255)

                cAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCt                                                                            <  1:2044182/91‑1 (MQ=255)

                  gATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTc                                                                          <  1:4042477/91‑1 (MQ=255)

                       gTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCagaag                                                                     >  1:3482225/1‑91 (MQ=255)

                        tATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCagaaga                                                                    <  1:35775/91‑1 (MQ=255)

                        tATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCagaaga                                                                    <  1:38643/91‑1 (MQ=255)

                        tATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCagaaga                                                                    <  1:39274/91‑1 (MQ=255)

                          tCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGaaa                                                                  >  1:769467/1‑91 (MQ=255)

                          tCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGaaa                                                                  >  1:987496/1‑91 (MQ=255)

                          tCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTCCAGAAGaaa                                                                  >  1:3967342/1‑91 (MQ=255)

                           cAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAAt                                                                 <  1:1366495/91‑1 (MQ=255)

                           cAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAAt                                                                 <  1:2017461/91‑1 (MQ=255)

                             aaTTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGt                                                               <  1:2101928/91‑1 (MQ=255)

                             aaTTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGt                                                               <  1:2399026/91‑1 (MQ=255)

                              aTTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTc                                                              <  1:2002138/91‑1 (MQ=255)

                               ttGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCa                                                             >  1:1710306/1‑91 (MQ=255)

                                tGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCAt                                                            >  1:2225395/1‑91 (MQ=255)

                                   tAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTa                                                         >  1:1032322/1‑91 (MQ=255)

                                     aTCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACa                                                       >  1:1910849/1‑91 (MQ=255)

                                     aTCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACa                                                       >  1:2706075/1‑91 (MQ=255)

                                     aTCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACa                                                       >  1:1032673/1‑91 (MQ=255)

                                      tCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAt                                                      >  1:1092877/1‑91 (MQ=255)

                                       cAGGATGCTATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAtc                                                     <  1:3395830/91‑1 (MQ=255)

                                       cAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAtc                                                     <  1:264433/91‑1 (MQ=255)

                                       cAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAtc                                                     >  1:3250106/1‑91 (MQ=255)

                                       cAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAtc                                                     <  1:162094/91‑1 (MQ=255)

                                        aGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAtct                                                    >  1:2302230/1‑91 (MQ=255)

                                        aGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACAtct                                                    >  1:2301796/1‑91 (MQ=255)

                                           aTGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCt                                                 >  1:3611109/1‑91 (MQ=255)

                                             gCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCttt                                               >  1:2137710/1‑91 (MQ=255)

                                              cAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTa                                              >  1:3239559/1‑91 (MQ=255)

                                               aaTTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAg                                             <  1:1090701/91‑1 (MQ=255)

                                               aaTTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAg                                             >  1:2059832/1‑91 (MQ=255)

                                               aaTTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATACACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAg                                             >  1:3311871/1‑91 (MQ=255)

                                                aTTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGt                                            <  1:4042953/91‑1 (MQ=255)

                                                aTTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGt                                            <  1:3001352/91‑1 (MQ=255)

                                                 ttGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCACCTTTAGTc                                           >  1:3974670/1‑91 (MQ=255)

                                                     tttAATGAGTGTATTAGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGCAGAAATGTCATTTACATCTCCTTTAGTCAAtt                                       >  1:3533738/1‑91 (MQ=255)

                                                       taatgatgaaattcgctcgcgaatacactcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCa                                     >  1:807401‑M2/36‑91 (MQ=255)

                                                        AATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCaa                                    <  1:2080247‑M1/91‑1 (MQ=255)

                                                         atgatgaaattcgctcgcgaatacactcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTGAAg                                   >  1:3212736‑M2/34‑91 (MQ=255)

                                                         atgatgaaattcgctcgcgaatacactcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAg                                   >  1:2575405‑M2/34‑91 (MQ=255)

                                                         ATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAg                                   >  1:3609056‑M1/1‑91 (MQ=255)

                                                         ATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAg                                   <  1:2009776‑M1/91‑1 (MQ=255)

                                                          tgatgaaattcgctcgcgaatacactcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGt                                  >  1:1473851‑M2/33‑91 (MQ=255)

                                                          tgatgaaattcgctcgcgaatacactcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGt                                  >  1:1011466‑M2/33‑91 (MQ=255)

                                                          TGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGt                                  >  1:1007721‑M1/1‑91 (MQ=255)

                                                             gtgtATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAt                               >  1:3195196/1‑91 (MQ=255)

                                                             gtgtATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAt                               >  1:2636075/1‑91 (MQ=255)

                                                                 aTTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAttctt                           >  1:953846/1‑91 (MQ=255)

                                                                 aTTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAttctt                           >  1:77265/1‑91 (MQ=255)

                                                                  ttCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAttcttc                          <  1:2160619/91‑1 (MQ=255)

                                                                  ttCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAttcttc                          <  1:2403755/91‑1 (MQ=255)

                                                                  ttCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAttcttc                          >  1:1820027/1‑91 (MQ=255)

                                                                  ttCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAAttcttc                          >  1:3905020/1‑91 (MQ=255)

                                                                   tcgctcgcgaatacactcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCg                         >  1:449183‑M2/24‑91 (MQ=255)

                                                                   tCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCg                         <  1:220382/91‑1 (MQ=255)

                                                                    cgcgAGCGAATTTCATTATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGa                        <  1:3211335/91‑1 (MQ=255)

                                                                     gcgagcgaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGAc                       <  1:2694135/91‑1 (MQ=255)

                                                                      cgagcgaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACt                      >  1:3252171/1‑91 (MQ=255)

                                                                      cgagcgaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACt                      <  1:2789238/91‑1 (MQ=255)

                                                                         gcgaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAAt                   >  1:3337594/1‑91 (MQ=255)

                                                                         gcgaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAAt                   >  1:3477639/1‑91 (MQ=255)

                                                                          cgaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAAtt                  >  1:4055003/1‑91 (MQ=255)

                                                                           gaATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAAttt                 <  1:1607538/91‑1 (MQ=255)

                                                                            aaTTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAAtttt                <  1:1702549/91‑1 (MQ=255)

                                                                              tttCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTAt              >  1:3580425/1‑91 (MQ=255)

                                                                              tttCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTAt              >  1:3160778/1‑91 (MQ=255)

                                                                                   tcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATAc         <  1:3884455‑M2/84‑1 (MQ=255)

                                                                                   tcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATAc         >  1:3516348‑M2/8‑91 (MQ=255)

                                                                                   tcattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATAc         <  1:2610567‑M2/84‑1 (MQ=255)

                                                                                    cattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACg        <  1:2925585‑M2/85‑1 (MQ=255)

                                                                                    cattaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACg        >  1:3285624‑M2/7‑91 (MQ=255)

                                                                                      ttaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAt      <  1:4048628‑M2/87‑1 (MQ=255)

                                                                                      ttaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAt      <  1:1927652‑M2/87‑1 (MQ=255)

                                                                                      ttaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAt      >  1:1177478‑M2/5‑91 (MQ=255)

                                                                                      ttaaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAt      <  1:1189906‑M2/87‑1 (MQ=255)

                                                                                       taaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAtt     >  1:2807161‑M2/4‑91 (MQ=255)

                                                                                       taaTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGAtt     >  1:3839429‑M2/4‑91 (MQ=255)

                                                                                         aTATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCa   <  1:2141788‑M2/90‑1 (MQ=255)

                                                                                          tatGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCAt  <  1:1370566/91‑1 (MQ=255)

CTAGATTTTTAGATGTCAGATCCGTATCAAATTGATAATCAGGATGCAATTGTTTTAATGAGTGTATTCGCGAGCGAATTTCATCATTAATATGCACGGTCTGTGCTTCAGAAGAAATGTCATTTACATCTCCTTTAGTCAATTCAAGTAATTCTTCGACTAATTTTATGATACGATTCAT  >  USA300TCH1516_ALE/1454543‑1454723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.