| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456995 = | 90 (0.920) | 16 (0.170) +TTAAA |
8/150 | NT | 14.9% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 105 (1.070) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457084‑1456995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCAACCATTGTTAGACTATAACAACGG < USA300TCH1516_ALE/1918582‑1918553 ||||| ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:595562/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:595003/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:3955011/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:1532238/1‑91ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAAT > 1:1532338/1‑91 TTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTA > 1:489377/1‑91 ATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAA < 1:1179172/91‑1 ATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAA < 1:1179282/91‑1 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:3519746/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG > 1:3519651/1‑91 TTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAG < 1:2637023/91‑1 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 1:862207/91‑1 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 1:3022722/91‑1 CTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAG < 1:2422508/91‑1 TAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGC < 1:390803/91‑1 AGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCC < 1:142450/91‑1 AGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCC < 1:143220/91‑1 AGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCC > 1:1445644/1‑91 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 1:1886735/91‑1 GCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCA < 1:3624639/91‑1 ACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAC > 1:2366357/1‑91 CGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACC < 1:3283916/91‑1 GTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCA < 1:3633148/91‑1 GAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTG < 1:2338855/91‑1 TTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTAT < 1:1091025/91‑1 TTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAA < 1:2633459/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:1395554/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:1395590/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:2837019/91‑1 TTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAC < 1:2040415/91‑1 GTGACAACGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAA < 1:2083914/91‑1 TGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAAC < 1:1882826/91‑1 ACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGG < 1:145666/91‑1 ACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACGG < 1:145745/91‑1 ||||| ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATAGCGTATGGTTTTCTTTTTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1457084‑1456995‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGCCAACCATTGTTAGACTATAACAACGG < USA300TCH1516_ALE/1918582‑1918553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |