| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456995 = | 90 (0.920) | 16 (0.170) +TTAAA |
8/150 | NT | 14.9% | intergenic (‑109/‑135) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918582 | 105 (1.070) | intergenic (‑300/+198) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
Only 100 of 183 total aligned reads displayed.
ATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGAATAAAT > USA300TCH1516_ALE/1456906‑1457084 | atGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGt > 1:2528586/1‑91 (MQ=255) tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTCGGTTTACTGCTTTTGTTTTTTGTa > 1:285860/1‑91 (MQ=255) tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa > 1:271762/1‑91 (MQ=255) tGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTa > 1:640360/1‑91 (MQ=255) cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaaaa < 1:869971/91‑1 (MQ=255) cGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaaaa < 1:2600452/91‑1 (MQ=255) cGTAAAAGACAATATACGTTATAACAACGGTGTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTaaaaa < 1:3320105/91‑1 (MQ=255) gTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAg < 1:2412272/91‑1 (MQ=255) tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa > 1:1177881/1‑91 (MQ=255) tAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa > 1:1178150/1‑91 (MQ=255) ggaaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTCACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGa < 1:3595822/89‑1 (MQ=255) aaaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAGCCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaa < 1:4153641/91‑1 (MQ=255) aaaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaa > 1:1322105/1‑91 (MQ=255) aaaGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGaaa > 1:1957171/1‑91 (MQ=255) aGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAAc < 1:2280068/91‑1 (MQ=255) aCAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCa > 1:3299434/1‑91 (MQ=255) cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt > 1:3135512/1‑91 (MQ=255) cAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCAt > 1:3676299/1‑91 (MQ=255) aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa > 1:2899855/1‑91 (MQ=255) aaTATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATa > 1:2431720/1‑91 (MQ=255) tataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACg > 1:2675716/1‑91 (MQ=255) ataCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGc < 1:1923063/91‑1 (MQ=255) taCGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGca < 1:3374539/91‑2 (MQ=255) cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt < 1:2483825/91‑1 (MQ=255) cGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAt > 1:2424018/1‑91 (MQ=255) gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag < 1:2437866/91‑5 (MQ=255) gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag < 1:2945426/91‑5 (MQ=255) gTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag < 1:1045658/91‑5 (MQ=255) gTTATAACAACGTTTTATAAAAGCAGTAAACCCTGACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGcatag < 1:1577934/91‑5 (MQ=255) taACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTa > 1:1366585/1‑91 (MQ=255) caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg > 1:4054094/1‑91 (MQ=255) caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg < 1:2177282/91‑1 (MQ=255) caacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATgg < 1:1478802/91‑1 (MQ=255) aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGt < 1:142682/91‑1 (MQ=255) aacGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCATA‑GCGTATGGt < 1:859243/91‑1 (MQ=39) acGTTTTATAAAAGCAGTAAACCCTTACGACATTTTAGGTTTACTGCTTTTGTGTTTTGTAAAAAGAAAACCATACGCATA‑GCGTATGGtt < 1:3536362/91‑1 (MQ=38) acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt > 1:907164/1‑91 (MQ=255) acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt < 1:3482836/91‑1 (MQ=255) acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGtt > 1:1102570/1‑91 (MQ=255) acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCATA‑GCGTATGGtt < 1:1822726/91‑1 (MQ=39) acGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGC‑ATAGCGTATGGtt < 1:2143569/91‑1 (MQ=39) cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTc > 1:1314002/1‑91 (MQ=255) cGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTc > 1:557000/1‑91 (MQ=255) ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAg < 1:1852097/91‑1 (MQ=255) ttttATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAg < 1:3466669/91‑1 (MQ=255) tataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaa > 1:4112054/1‑91 (MQ=255) tataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaa > 1:1029450/1‑91 (MQ=255) ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa < 1:226581/91‑1 (MQ=255) ataAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGaaaa < 1:3391669/91‑1 (MQ=255) taAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAg < 1:2674825/91‑1 (MQ=255) gcagtaaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt > 1:4034871‑M2/39‑91 (MQ=255) GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt > 1:1757828‑M1/1‑91 (MQ=255) GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCt > 1:3121738‑M1/1‑91 (MQ=255) GCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGCTTCt > 1:3276745‑M1/1‑91 (MQ=255) gtaaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTAcc > 1:535168‑M2/36‑91 (MQ=255) taaacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCa > 1:2195649‑M2/35‑91 (MQ=255) AAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGATTCTACCAt < 1:3978870‑M1/91‑1 (MQ=255) aacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCAtt > 1:1275526‑M2/33‑91 (MQ=255) aacctaaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCAtt > 1:2697348‑M2/33‑91 (MQ=255) ACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTg < 1:1010087‑M1/91‑1 (MQ=255) ccgttgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGt < 1:145745‑M1/56‑1 (MQ=255) taaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTca > 1:112870‑M2/29‑91 (MQ=255) taaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTca > 1:3595532‑M2/29‑91 (MQ=255) ttgttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCGTTGTcac < 1:2083914‑M1/59‑1 (MQ=255) ttACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTcac < 1:455337/91‑1 (MQ=255) aaagtgtcgtaagggtttactgcttttGTTTTTTGTAAAAAGAAAAACATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTcac > 1:3283161‑M2/28‑91 (MQ=255) gttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑aa < 1:1395590‑M1/61‑1 (MQ=255) gttatagtctaacaatggttggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑aa < 1:2040415‑M1/61‑1 (MQ=255) aCGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑aa > 1:973098/1‑91 (MQ=255) cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑aaaaaa < 1:2025459/91‑1 (MQ=255) cacTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑aaaaaa > 1:3246301/1‑91 (MQ=255) acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAAt > 1:1449/1‑91 (MQ=255) acTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAAt > 1:1936893/1‑91 (MQ=255) cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATg < 1:34188/91‑1 (MQ=255) cTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATg > 1:2847280/1‑91 (MQ=255) aGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCAtc < 1:188534/91‑1 (MQ=255) ggtttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCAtct < 1:1682464‑M2/77‑1 (MQ=255) caatggttggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCAtctc < 1:2338855‑M1/73‑1 (MQ=255) ttactgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTa > 1:138018‑M2/12‑91 (MQ=255) tggttggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTAc < 1:3633148‑M1/76‑1 (MQ=255) ctgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGt > 1:1132125‑M2/9‑91 (MQ=255) ctgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGt > 1:1132201‑M2/9‑91 (MQ=255) ctgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGt > 1:461043‑M2/9‑91 (MQ=255) tgcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAAATGCATCTCTACGt > 1:3418168‑M2/8‑91 (MQ=255) tggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGc < 1:1886735‑M1/80‑1 (MQ=255) gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGc < 1:3729734‑M2/85‑1 (MQ=255) gcttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGc > 1:1713864‑M2/7‑91 (MQ=255) ggctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCt > 1:1445644‑M1/11‑91 (MQ=255) ttttGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTa < 1:672‑M2/87‑1 (MQ=255) gctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTa < 1:390803‑M1/82‑1 (MQ=255) ctctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAg < 1:3022722‑M1/83‑1 (MQ=255) ctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaa > 1:3519651‑M1/7‑91 (MQ=255) ctttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaa < 1:2637023‑M1/85‑1 (MQ=255) tttaaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaat < 1:1179282‑M1/86‑1 (MQ=255) ttttttGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaata < 1:2003125/91‑1 (MQ=34) ttttttGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaata > 1:1609081/1‑91 (MQ=34) taaTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaataa > 1:489377‑M1/4‑91 (MQ=255) aTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaataaat > 1:3955011‑M1/2‑91 (MQ=255) aTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaataaat > 1:595562‑M1/2‑91 (MQ=255) aTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGaataaat > 1:1532238‑M1/2‑91 (MQ=255) | ATATGCCCGTAAAAGACAATATACGTTATAACAACGTTTTATAAAAGCAGTAAACCCTTACGACACTTTAGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTAT‑GCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC‑AAAAAATGCATCTCTACGTGCTAGAATAAAT > USA300TCH1516_ALE/1456906‑1457084 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |