| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1460298 | 79 (0.800) | 15 (0.190) | 10/128 | NT | 18.1% | intergenic (‑330/+70) | USA300HOU_RS07250/USA300HOU_RS07255 | hypothetical protein/putative CtpA‑like serine protease |
| ? | USA300TCH1516_ALE | = 1460310 | 73 (0.930) | intergenic (‑342/+58) | USA300HOU_RS07250/USA300HOU_RS07255 | hypothetical protein/putative CtpA‑like serine protease | |||||
TTGTTATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1460193‑1460298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacgcctcctaaattTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATGTAAATA < USA300TCH1516_ALE/1460310‑1460221 TTGTTATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAA > 1:3826058/1‑91 GTTATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACA < 1:2946616/91‑1 TATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACG > 1:1327267/1‑91 ATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGC < 1:1539077/91‑1 ATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGC < 1:1537467/91‑1 TCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCC < 1:3838746/91‑1 TCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCC < 1:1777031/91‑1 AGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTC < 1:2004821/91‑1 AGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTC > 1:3602991/1‑91 GCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCC < 1:1388599/91‑1 CGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCT < 1:806152/91‑1 CGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTGAGACGTCAATAAAAATAAACACGCCTCCT < 1:1598288/91‑1 GATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTA < 1:3064283/91‑1 GATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTA > 1:1152691/1‑91 ATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAA > 1:145194/1‑91 ATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAA > 1:227431/1‑91 ATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAA > 1:227093/1‑91 ATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAA > 1:226923/1‑91 GATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAAT > 1:527595/1‑91 ATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATT < 1:2331098/91‑1 ATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATT < 1:4010838/91‑1 GCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGAT < 1:440391/91‑1 GCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGAT < 1:440133/91‑1 GTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAG < 1:1942661/91‑1 GTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAG < 1:3588833/91‑1 TTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAGACACGCCTCCTAAATTTGCAAAGATAGC < 1:1270771/91‑1 TTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGC < 1:1464431/91‑1 TATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTGGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCA < 1:200334/91‑1 TATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCA < 1:3067413/91‑1 ATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAA < 1:1101311/91‑1 TTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAAT < 1:3109111/91‑1 TTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCG < 1:470494/91‑1 TTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCG < 1:1390812/91‑1 TAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGT < 1:676641/91‑1 TTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTG < 1:1420662/91‑1 GTTAGACGTCAATAAAAATAAACACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAA < 1:716782/91‑1 ACACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTA < 1:2787457/91‑1 CACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTAC > 1:1086887/1‑91 ACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACA > 1:1316750/1‑91 ACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACA > 1:2446767/1‑91 ACGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACA > 1:2446689/1‑91 CGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAA > 1:1396304/1‑91 CGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAA > 1:1961226/1‑91 CGCCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAA > 1:126322/1‑91 CCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAAT > 1:590825/1‑91 CCTCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAAT > 1:591732/1‑91 TCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGA > 1:887382/1‑91 TCCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGA < 1:245287/91‑1 CCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGAT < 1:994206/91‑1 CCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGAT < 1:3904031/91‑1 CCTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGAT > 1:2476026/1‑91 CTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATG > 1:3156756/1‑91 CTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATG < 1:2718432/91‑1 CTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATG < 1:2211802/91‑1 CTAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATG < 1:2211756/91‑1 TAAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATGT < 1:3660611/91‑1 AAATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTNACANATGATGTA > 1:381346/1‑91 AATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATGTAA > 1:2547431/1‑91 AATTTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATGTAA > 1:2547326/1‑91 TTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATGTAAATA > 1:2661041/1‑91 TTGTTATCAGCGATGATAGAAATTGCGTTATTTACATCATTTGTAAATGTCTAATTTATATCTTTTAGAGTTAGACGTCAATAAAAATAAACACGCCTCCTAAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1460193‑1460298‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acacgcctcctaaattTGCAAAGATAGCAATTTAGGAGGCGTGTTTATTTTTATTGACGTCTAACTCTAAAAGATATAAATTAGACATTTACAAATGATGTAAATA < USA300TCH1516_ALE/1460310‑1460221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |