| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1469397 | 74 (0.750) | 5 (0.060) | 5/144 | NT | 6.2% | coding (345/705 nt) | yhhQ | Inner membrane protein YhhQ |
| ? | USA300TCH1516_ALE | = 1469422 | 84 (0.950) | coding (370/705 nt) | yhhQ | Inner membrane protein YhhQ | |||||
AAAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1469300‑1469397‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcacaaCATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAATT < USA300TCH1516_ALE/1469422‑1469334 AAAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATAT < 1:3050791/91‑1AAAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATAT < 1:2433961/91‑1 AAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATG < 1:2160999/91‑1 AAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATG > 1:2967729/1‑91 AAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATG < 1:2160701/91‑1 AGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGG < 1:2545245/91‑1 GAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGC < 1:3114537/91‑1 GAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGC < 1:2017682/91‑1 GAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGC < 1:3531676/91‑1 CAGTTTGGTTAGGCTTTTCATCAACCATAATTATGATAATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACA > 1:3510753/1‑91 CAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACA < 1:147630/91‑1 CAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACA > 1:2765739/1‑91 CAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACA > 1:3475044/1‑91 AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA < 1:2327075/91‑1 AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA > 1:3930730/1‑91 AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA > 1:2595010/1‑91 AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA < 1:2326989/91‑1 AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA < 1:1799147/91‑1 CATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAACATCAAAGATTGCGTGTAATGCT < 1:236972/91‑1 ATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAACATCAAAGATTGCGTGTAATGCTT < 1:1013907/91‑1 TAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAACATCAAAGATTGCGTGTAATGCTTTT < 1:1771994/91‑1 GATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCA < 1:1503045/91‑1 ATTACATTTTATTCCTGCACCAGAAGATATGGCACAACATCAAAGATTGCGTGTAAGGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAA < 1:4035773/91‑1 cATGGCACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAA > 1:3379879/2‑91 TGGCACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATC > 1:1736055/1‑91 GGCACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCA < 1:111008/91‑1 CACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATA < 1:2236014/91‑1 ACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAA < 1:3699550/91‑1 ACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAA < 1:3699991/91‑1 ACAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAA > 1:3871787/1‑91 CAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAAT < 1:1353905/91‑1 CAACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAAT < 1:1353700/91‑1 AACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAATT < 1:3067226/91‑1 AACATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAATT < 1:2978979/91‑1 AAAGAGCAGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1469300‑1469397‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcacaaCATCAAAGATTGCGTGTAATGCTTTTTGTGCCATATCTTCTGGTGCAGGAATAAAATGTAATGACAATTGCATAACAATAATCATAATT < USA300TCH1516_ALE/1469422‑1469334 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |