BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1469397	74 (0.750)	5 (0.060)	5/144	NT	6.2%	coding (345/705 nt)	yhhQ	Inner membrane protein YhhQ
*	?	USA300TCH1516_ALE	= 1469422	84 (0.950)	5 (0.060)	5/144	NT	6.2%	coding (370/705 nt)	yhhQ	Inner membrane protein YhhQ

Only 100 of 116 total aligned reads displayed.

AATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAGTA  >  USA300TCH1516_ALE/1469334‑1469511

aaTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGtt                                                                                         <  1:3067226‑M2/91‑3 (MQ=255)

aaTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGtt                                                                                         <  1:2978979‑M2/91‑3 (MQ=255)

 aTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttg                                                                                        <  1:1353700‑M2/91‑4 (MQ=255)

 aTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttg                                                                                        <  1:1353905‑M2/91‑4 (MQ=255)

  ttATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgt                                                                                       >  1:3871787‑M2/1‑87 (MQ=255)

  ttATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgt                                                                                       <  1:3699991‑M2/91‑5 (MQ=255)

  ttATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgt                                                                                       <  1:3699550‑M2/91‑5 (MQ=255)

   tATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgtg                                                                                      <  1:2236014‑M2/91‑6 (MQ=255)

     tGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgcc                                                                                    <  1:111008‑M2/91‑8 (MQ=255)

      gATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgcca                                                                                   >  1:1736055‑M2/1‑83 (MQ=255)

        ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACg                                                                                 <  1:990436/91‑1 (MQ=255)

        ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACg                                                                                 <  1:1007232/91‑1 (MQ=255)

        ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACg                                                                                 <  1:583574/91‑1 (MQ=255)

         tattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGc                                                                                <  1:574522/91‑1 (MQ=255)

         tattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGc                                                                                <  1:2440458/91‑1 (MQ=255)

          attGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCa                                                                               <  1:3937226/91‑1 (MQ=255)

          attGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCa                                                                               >  1:748944/1‑91 (MQ=255)

           ttGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATGTGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCAt                                                                              <  1:3283879/91‑1 (MQ=255)

           ttGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCAt                                                                              <  1:1199367/91‑1 (MQ=255)

           ttGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCAt                                                                              <  1:725582/91‑1 (MQ=255)

             gTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTg                                                                            <  1:2364700/91‑1 (MQ=255)

              ttATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGc                                                                           <  1:2168774/91‑1 (MQ=255)

                    aaTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAgg                                                                     >  1:253057/1‑91 (MQ=255)

                     aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                                                    <  1:3786402/91‑1 (MQ=255)

                     aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                                                    <  1:3239271/91‑1 (MQ=255)

                     aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                                                    <  1:1789594/91‑1 (MQ=255)

                       tGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTc                                                                  >  1:2334034/1‑91 (MQ=255)

                        gTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCa                                                                 >  1:3954784/1‑91 (MQ=255)

                        gTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCa                                                                 >  1:3954783/1‑91 (MQ=255)

                         tCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCaa                                                                >  1:1507061/1‑91 (MQ=255)

                         tCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCaa                                                                >  1:1507847/1‑91 (MQ=255)

                          cATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAt                                                               >  1:542350/1‑91 (MQ=255)

                           aTTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAtc                                                              >  1:1564649/1‑91 (MQ=255)

                           aTTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAtc                                                              >  1:3026901/1‑91 (MQ=255)

                             tACATTTTATTCATGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAtcgt                                                            >  1:3175933/1‑91 (MQ=255)

                                   ttATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCata                                                      <  1:1689508/91‑1 (MQ=255)

                                     aTTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCatata                                                    >  1:1862079/1‑91 (MQ=255)

                                     aTTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCatata                                                    >  1:856108/1‑91 (MQ=255)

                                       tCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATAtatt                                                  <  1:932515/91‑1 (MQ=255)

                                        ccTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATAtatta                                                 >  1:1900827/1‑91 (MQ=255)

                                         cTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATAtattat                                                >  1:3413331/1‑91 (MQ=255)

                                          tGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATattatt                                               >  1:1635282/1‑91 (MQ=255)

                                           gCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTg                                              >  1:586713/1‑91 (MQ=255)

                                                agaagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCaa                                         <  1:2700121/91‑1 (MQ=255)

                                                 gaagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAAc                                        <  1:51888/91‑1 (MQ=255)

                                                  aagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACa                                       >  1:1244730/1‑91 (MQ=255)

                                                  aagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACa                                       <  1:208020/91‑1 (MQ=255)

                                                  aagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACa                                       >  1:4131013/1‑91 (MQ=255)

                                                   agaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACat                                      >  1:1291508/1‑91 (MQ=255)

                                                   agaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACat                                      >  1:2215473/1‑91 (MQ=255)

                                                       atGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCTCGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTg                                  >  1:3588348/1‑91 (MQ=255)

                                                       atGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTg                                  >  1:3588574/1‑91 (MQ=255)

                                                       atGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTg                                  >  1:3588588/1‑91 (MQ=255)

                                                        tGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatc                                 <  1:1503045‑M2/91‑59 (MQ=255)

                                                        tGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGa                                 <  1:3702355/91‑1 (MQ=255)

                                                        tGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGa                                 >  1:3637674/1‑91 (MQ=255)

                                                         ggCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGAt                                >  1:4123032/1‑91 (MQ=255)

                                                           cacaAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGt                              >  1:709247/1‑91 (MQ=255)

                                                           cacaAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGt                              <  1:196478/91‑1 (MQ=255)

                                                            acaAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTa                             >  1:3815527/1‑91 (MQ=255)

                                                             caAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAt                            >  1:2513817/1‑91 (MQ=255)

                                                               aaaaGCATTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataatta                          <  1:1771994‑M2/91‑66 (MQ=255)

                                                               aaaaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAttt                          <  1:3032681/91‑1 (MQ=255)

                                                               aaaaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAttt                          <  1:3758188/91‑1 (MQ=255)

                                                               aaaaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAttt                          <  1:2473113/91‑1 (MQ=255)

                                                                 aaGCATTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataattaat                        <  1:1013907‑M2/91‑68 (MQ=255)

                                                                 aaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTAt                        >  1:2755071/1‑91 (MQ=255)

                                                                  aGCATTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataattaatg                       <  1:236972‑M2/91‑69 (MQ=255)

                                                                   gCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCt                      <  1:1298565/91‑1 (MQ=255)

                                                                   gCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCt                      <  1:3516555/91‑1 (MQ=255)

                                                                   gCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCt                      >  1:2953853/1‑91 (MQ=255)

                                                                   gCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCt                      >  1:415644/1‑91 (MQ=255)

                                                                   gCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCt                      >  1:235829/1‑91 (MQ=255)

                                                                   gCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCt                      >  1:415562/1‑91 (MQ=255)

                                                                    cATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCtt                     <  1:541139/91‑1 (MQ=255)

                                                                    cATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCtt                     <  1:4120199/91‑1 (MQ=255)

                                                                     aTTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAGTCGTCGCATATATTATTGGTCAACATATTGATGCATTTATCttt                    >  1:3296920/1‑91 (MQ=255)

                                                                     aTTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCttt                    >  1:1593427/1‑91 (MQ=255)

                                                                       tACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTc                  >  1:3317112/1‑91 (MQ=255)

                                                                         cacGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCAc                >  1:1511071/1‑91 (MQ=255)

                                                                         cacGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCAc                >  1:561450/1‑91 (MQ=255)

                                                                         cacGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCAc                <  1:772247/91‑1 (MQ=255)

                                                                           cGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTa              <  1:3885123/91‑1 (MQ=255)

                                                                            gCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTaa             <  1:2549453/91‑1 (MQ=255)

                                                                             cAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAAt            <  1:804207/91‑1 (MQ=255)

                                                                               aTCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTa          >  1:151925/1‑91 (MQ=255)

                                                                               aTCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTa          >  1:3054807/1‑91 (MQ=255)

                                                                               aTCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTa          >  1:824486/1‑91 (MQ=255)

                                                                                tCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTaa         >  1:840372/1‑91 (MQ=255)

                                                                                  tttGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTaaaa       <  1:164532/91‑1 (MQ=255)

                                                                                  tttGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTaaaa       >  1:2303872/1‑91 (MQ=255)

                                                                                  tttGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTaaaa       <  1:2058185/91‑1 (MQ=255)

                                                                                   ttGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTaaaaa      >  1:667399/1‑91 (MQ=255)

                                                                                   ttGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTaaaaa      <  1:1774772/91‑1 (MQ=255)

                                                                                    tGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTCATTaacaaa     >  1:3728214/1‑91 (MQ=255)

                                                                                     gATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAg    <  1:590442/91‑1 (MQ=255)

                                                                                     gATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAg    <  1:1361139/91‑1 (MQ=255)

                                                                                     gATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAg    >  1:3215593/1‑91 (MQ=255)

                                                                                     gATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAg    >  1:1575369/1‑91 (MQ=255)

                                                                                       tgttgtGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAGTa  >  1:607620/1‑91 (MQ=255)

AATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTTATCTTTTCACTAATTAAAAAAGTA  >  USA300TCH1516_ALE/1469334‑1469511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.