BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1469397	74 (0.750)	5 (0.060)	5/144	NT	6.2%	coding (345/705 nt)	yhhQ	Inner membrane protein YhhQ
*	?	USA300TCH1516_ALE	= 1469422	84 (0.950)	5 (0.060)	5/144	NT	6.2%	coding (370/705 nt)	yhhQ	Inner membrane protein YhhQ

Only 100 of 121 total aligned reads displayed.

AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTT  >  USA300TCH1516_ALE/1469307‑1469487

aGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA                                                                                            <  1:2326989‑M1/91‑1 (MQ=255)

aGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA                                                                                            <  1:2327075‑M1/91‑1 (MQ=255)

aGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA                                                                                            >  1:3930730‑M1/1‑91 (MQ=255)

aGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAA                                                                                            >  1:2595010‑M1/1‑91 (MQ=255)

 gTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACaaa                                                                                           >  1:1618382/1‑91 (MQ=255)

  tttGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACaaaa                                                                                          >  1:1873466/1‑91 (MQ=255)

  tttGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACaaaa                                                                                          >  1:3959056/1‑91 (MQ=255)

        tAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCAtt                                                                                    >  1:2979016/1‑91 (MQ=255)

            cTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTacac                                                                                <  1:3156219/91‑1 (MQ=255)

            cTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTacac                                                                                <  1:3156631/91‑1 (MQ=255)

             ttttCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACg                                                                               >  1:542821/1‑91 (MQ=255)

              ttttATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGc                                                                              <  1:3220710/91‑1 (MQ=255)

              tttCATCAACATTCATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGc                                                                              <  1:4146640/91‑1 (MQ=255)

              tttCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGc                                                                              <  1:2785001/91‑1 (MQ=255)

              tttCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGc                                                                              <  1:2647384/91‑1 (MQ=255)

               ttCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCa                                                                             >  1:2229912/1‑91 (MQ=255)

                  atcaACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATc                                                                          >  1:3267722/1‑91 (MQ=255)

                  atcaACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATc                                                                          <  1:3387797/91‑1 (MQ=255)

                   tcaACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCt                                                                         >  1:2336873/1‑91 (MQ=255)

                    caACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCtt                                                                        >  1:1293727/1‑91 (MQ=255)

                    caACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCtt                                                                        >  1:3403664/1‑91 (MQ=255)

                    caACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCtt                                                                        >  1:1697060/1‑91 (MQ=255)

                    caACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCtt                                                                        >  1:434559/1‑91 (MQ=255)

                        attaattaTGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAcatcaaagattgcgtgtaatgctt                                                                    <  1:1013907‑M1/91‑25 (MQ=255)

                          taattaTGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAcatcaaagattgcgtgtaatgctttt                                                                  <  1:1771994‑M1/91‑27 (MQ=255)

                           aaTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGtt                                                                 <  1:3067226‑M2/91‑3 (MQ=255)

                           aaTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGtt                                                                 <  1:2978979‑M2/91‑3 (MQ=255)

                            aTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttg                                                                <  1:1353700‑M2/91‑4 (MQ=255)

                            aTTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttg                                                                <  1:1353905‑M2/91‑4 (MQ=255)

                             ttATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgt                                                               >  1:3871787‑M2/1‑87 (MQ=255)

                             ttATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgt                                                               <  1:3699991‑M2/91‑5 (MQ=255)

                             ttATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgt                                                               <  1:3699550‑M2/91‑5 (MQ=255)

                                tGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgcc                                                            <  1:111008‑M2/91‑8 (MQ=255)

                                 gATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAcatcaaagattgcgtgtaatgctttttgtgcca                                                           <  1:1503045‑M1/91‑34 (MQ=255)

                                 gATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgcca                                                           >  1:1736055‑M2/1‑83 (MQ=255)

                                   ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgccatg                                                         >  1:3379879‑M2/1‑81 (MQ=255)

                                   ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACg                                                         <  1:990436/91‑1 (MQ=255)

                                   ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACg                                                         <  1:583574/91‑1 (MQ=255)

                                   ttattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACg                                                         <  1:1007232/91‑1 (MQ=255)

                                    tattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGc                                                        <  1:2440458/91‑1 (MQ=255)

                                    tattGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGc                                                        <  1:574522/91‑1 (MQ=255)

                                     attGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCa                                                       <  1:3937226/91‑1 (MQ=255)

                                     attGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCa                                                       >  1:748944/1‑91 (MQ=255)

                                      ttGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATGTGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCAt                                                      <  1:3283879/91‑1 (MQ=255)

                                      ttGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCAt                                                      <  1:1199367/91‑1 (MQ=255)

                                        gTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTg                                                    <  1:2364700/91‑1 (MQ=255)

                                         ttATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGc                                                   <  1:2168774/91‑1 (MQ=255)

                                          tATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCt                                                  >  1:2754832/1‑91 (MQ=255)

                                             gCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTa                                               >  1:3064830/1‑91 (MQ=255)

                                               aaTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAgg                                             >  1:253057/1‑91 (MQ=255)

                                                aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                            <  1:3239271/91‑1 (MQ=255)

                                                aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                            <  1:1789594/91‑1 (MQ=255)

                                                aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                            <  1:3786402/91‑1 (MQ=255)

                                                aTTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGc                                            <  1:1637853/91‑1 (MQ=255)

                                                 ttGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCt                                           >  1:366332/1‑91 (MQ=255)

                                                  tGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTc                                          >  1:2334034/1‑91 (MQ=255)

                                                   gTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCa                                         >  1:3954784/1‑91 (MQ=255)

                                                    tCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCaa                                        >  1:1507061/1‑91 (MQ=255)

                                                    tCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCaa                                        >  1:1507847/1‑91 (MQ=255)

                                                     cATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAt                                       >  1:542350/1‑91 (MQ=255)

                                                      aTTACATTTTATTCCTGCACCAGAAGATATGGCACAAcatcaaagattgcgtgtaaggctttttgtgccatatcttctggtgcaggaataa                                      <  1:4035773‑M1/91‑55 (MQ=255)

                                                      aTTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAtc                                      >  1:3026901/1‑91 (MQ=255)

                                                          cATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAAtcgtcg                                  >  1:3800296/1‑91 (MQ=255)

                                                              ttATTCCTGCACCAGAAGATATGGCACAAAAAGCCTTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaat                              <  1:4035773‑M2/91‑38 (MQ=255)

                                                              ttATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCata                              <  1:1689508/91‑1 (MQ=255)

                                                                aTTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCatata                            >  1:856108/1‑91 (MQ=255)

                                                                aTTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCatata                            >  1:1862079/1‑91 (MQ=255)

                                                                  tCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATAtatt                          <  1:932515/91‑1 (MQ=255)

                                                                   ccTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATAtatta                         >  1:1900827/1‑91 (MQ=255)

                                                                    cTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATAtattat                        >  1:3413331/1‑91 (MQ=255)

                                                                     tGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATattatt                       >  1:1635282/1‑91 (MQ=255)

                                                                     tGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATattatt                       >  1:602536/1‑91 (MQ=255)

                                                                      gCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTg                      >  1:2220813/1‑91 (MQ=255)

                                                                      gCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTg                      >  1:586713/1‑91 (MQ=255)

                                                                           agaagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCaa                 <  1:2700121/91‑1 (MQ=255)

                                                                            gaagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAAc                <  1:51888/91‑1 (MQ=255)

                                                                             aagaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACa               >  1:1244730/1‑91 (MQ=255)

                                                                              agaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACat              >  1:2215473/1‑91 (MQ=255)

                                                                              agaTATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACat              >  1:1291508/1‑91 (MQ=255)

                                                                                  atGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCTCGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTg          >  1:3588348/1‑91 (MQ=255)

                                                                                  atGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTg          >  1:3588588/1‑91 (MQ=255)

                                                                                   tGGCACAAAAAGCATTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatc         <  1:1503045‑M2/91‑59 (MQ=255)

                                                                                   tGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGa         <  1:1859957/91‑1 (MQ=255)

                                                                                   tGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGa         <  1:3702355/91‑1 (MQ=255)

                                                                                   tGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGa         >  1:3637674/1‑91 (MQ=255)

                                                                                    ggCACAAcatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatca        <  1:111008‑M1/91‑85 (MQ=255)

                                                                                    ggCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGAt        >  1:4123032/1‑91 (MQ=255)

                                                                                      cacaAcatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcata      <  1:2236014‑M1/91‑87 (MQ=255)

                                                                                      cacaAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGt      >  1:709247/1‑91 (MQ=255)

                                                                                      cacaAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGt      <  1:196478/91‑1 (MQ=255)

                                                                                       acaacatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataa     >  1:3871787‑M1/1‑4 (MQ=255)

                                                                                       acaacatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataa     <  1:3699550‑M1/91‑88 (MQ=255)

                                                                                        caacatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataat    <  1:1353700‑M1/91‑89 (MQ=255)

                                                                                        caAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAt    >  1:2513817/1‑91 (MQ=255)

                                                                                         aacatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataatt   <  1:3067226‑M1/91‑90 (MQ=255)

                                                                                         aacatcaaagattgcgtgtaatgctttttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataatt   <  1:2978979‑M1/91‑90 (MQ=255)

                                                                                          aaaaGCATTACACGCAATCTTTGATGttgtgccatatcttctggtgcaggaataaaatgtaatgacaattgcataacaataatcataatta  <  1:1771994‑M2/91‑66 (MQ=255)

                                                                                          aaaaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAttt  <  1:3758188/91‑1 (MQ=255)

                                                                                          aaaaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAttt  <  1:3032681/91‑1 (MQ=255)

                                                                                          aaaaGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTAttt  <  1:2473113/91‑1 (MQ=255)

AGTTTGGTTAGGCTTTTCATCAACATTAATTATGATTATTGTTATGCAATTGTCATTACATTTTATTCCTGCACCAGAAGATATGGCACAAAAAGCATTACACGCAATCTTTGATGTTGTGCCACGCATTGCTTTAGGCTCAATCGTCGCATATATTATTGGTCAACATATTGATGTATTT  >  USA300TCH1516_ALE/1469307‑1469487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.