| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1494261 | 55 (0.560) | 7 (0.080) | 4/150 | NT | 11.2% | coding (7763/31266 nt) | ebh_1 | Extracellular matrix‑binding protein ebh |
| ? | USA300TCH1516_ALE | = 1494291 | 59 (0.640) | coding (7733/31266 nt) | ebh_1 | Extracellular matrix‑binding protein ebh | |||||
TCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1494169‑1494261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG < USA300TCH1516_ALE/1494291‑1494202 TCACAGAACTTTGTAAGTTATTTTTAGCCGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCACTCTTAGT > 1:419108/1‑91 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT > 1:843716/1‑91 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT > 1:843591/1‑91 TACTGATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCA < 1:3451015/91‑1 TACTGATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCA < 1:3450978/91‑1 CTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACA < 1:3258090/91‑1 CTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACA < 1:3258236/91‑1 TAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAA < 1:3155361/91‑1 TGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTA < 1:2513530/91‑1 TGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTA < 1:2511837/91‑1 AGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAA > 1:1343920/1‑91 GTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAAT < 1:3069844/91‑1 GTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAAT < 1:256339/91‑1 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGTTTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT > 1:3591487/1‑91 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT > 1:1326978/1‑91 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT < 1:342659/91‑1 TCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG > 1:2568552/1‑91 TCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1494169‑1494261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTAG < USA300TCH1516_ALE/1494291‑1494202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |