| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1507982 | 83 (0.840) | 21 (0.270) | 9/128 | NT | 23.0% | intergenic (‑407/+68) | ald1/ypcP | Alanine dehydrogenase 1/5'‑3' exonuclease |
| ? | USA300TCH1516_ALE | = 1507993 | 74 (0.940) | intergenic (‑418/+57) | ald1/ypcP | Alanine dehydrogenase 1/5'‑3' exonuclease | |||||
GAAATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1507877‑1507982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagactatttctaTCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGATTAA < USA300TCH1516_ALE/1507993‑1507904 GAAATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCA < 1:3202582/91‑1 AAATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAA > 1:3784727/1‑91 AATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAA > 1:3337581/1‑91 ATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAA < 1:4124951/91‑1 ATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAA < 1:1331705/91‑1 TATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAA < 1:3248776/91‑1 TATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAA < 1:3248761/91‑1 TAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGA > 1:1409716/1‑91 AATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGAC > 1:108178/1‑91 AATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGAC < 1:3370145/91‑1 AATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGAC < 1:1850518/91‑1 AATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGAC > 1:108024/1‑91 AATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGAC < 1:804564/91‑1 ATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACT > 1:2323169/1‑91 ATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACT > 1:1193754/1‑91 ATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAAGTCGGCTTACTTAGTCACTCTGACATATCCAAATACGCAAAAAGACT < 1:3312397/91‑1 TCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTAT < 1:80776/91‑1 TCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTAT < 1:296230/91‑1 CTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATT > 1:68567/1‑91 TTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTC > 1:1613765/1‑91 TTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTC > 1:1613968/1‑91 TTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTC > 1:1172584/1‑91 TATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCT < 1:4056402/91‑1 TATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCT < 1:2889420/91‑1 TCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAA < 1:2915887/91‑1 CAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAA < 1:2558767/91‑1 AAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAAT < 1:1561786/91‑1 AAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAAT < 1:2229/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTGACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:3401803/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:1157313/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:660029/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:3416239/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:3619844/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:3641510/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:4042451/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:1568017/91‑1 AATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATA < 1:1604909/91‑1 ATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAG < 1:235763/91‑1 ATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAG < 1:233913/91‑1 ATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAG < 1:1745676/91‑1 ATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAG < 1:3038633/91‑1 TATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAGT < 1:3037262/91‑1 ATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAGTC < 1:2924716/91‑1 GTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTT < 1:3331203/91‑1 TATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTT < 1:2620508/91‑1 AAAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGA > 1:1558460/1‑91 AAAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGA < 1:1795608/91‑1 AAAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGA < 1:1796265/91‑1 AAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGAT < 1:1395125/91‑1 AAAAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGAT > 1:3438404/1‑91 AAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATAC < 1:962734/91‑1 AAGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATAC < 1:3277879/91‑1 AGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACA < 1:1112892/91‑1 AGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACA > 1:1986590/1‑91 AGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACA > 1:3750719/1‑91 AGACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACA > 1:3749204/1‑91 GACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACAT < 1:2529359/91‑1 ACTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATA > 1:108345/1‑91 CTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATAT > 1:2472490/1‑91 CTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATAT < 1:2872498/91‑1 CTATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATAT < 1:1097719/91‑1 TATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATT < 1:2857871/91‑1 TATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATT > 1:15293/1‑91 TATTTCTATCGATACAAGGTAGAAATAGTCTTTGTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATT < 1:3398402/91‑1 ATTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTT > 1:812643/1‑91 TTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTG > 1:3873849/1‑91 TTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTG > 1:1567410/1‑91 TTTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTG > 1:541852/1‑91 TTTCTATCGATAAAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTG > 1:3184251/1‑91 TTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGA > 1:1644319/1‑91 TTCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGA < 1:1190304/91‑1 TCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGAT > 1:2825310/1‑91 TCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGAT > 1:1839610/1‑91 TCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGAT < 1:2917865/91‑1 TCTATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGAT > 1:2222330/1‑91 ATCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGATTAA < 1:3260737/91‑1 GAAATATAATTCTTTATACTCTATTGATTAATCAAATATGTATCTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1507877‑1507982‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagactatttctaTCGATACAAGGTAGAAATAGTCTTTTTGCGTATTTGGATATGTCAGAGTGAATAAATAAGCCGAATTTTGATAGATACATATTTGATTAA < USA300TCH1516_ALE/1507993‑1507904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |