| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1519629 = | 109 (1.110) | 8 (0.090) | 4/144 | NT | 7.9% | coding (753/2184 nt) | ponA | Penicillin‑binding protein 1A/1B |
| ? | USA300TCH1516_ALE | 1519680 = | 89 (1.010) | coding (804/2184 nt) | ponA | Penicillin‑binding protein 1A/1B | |||||
ACGATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1519725‑1519629‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTGA > USA300TCH1516_ALE/1519680‑1519769 ACGATTTACTAAGCTCGCTTTTAAATCGATTTTCTTAGCATCTGCCCATTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAA < 1:4150392/91‑1 GATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAAC > 1:329654/1‑91 GATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAAC > 1:730394/1‑91 GATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAAC < 1:584901/91‑1 ATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACA < 1:974121/91‑1 ATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACA > 1:3785305/1‑91 ATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACA > 1:3785407/1‑91 ATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACA < 1:2500961/91‑1 ATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACA < 1:22215/91‑1 ATTTACTAAGTGCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACA < 1:3761418/91‑1 TTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAG < 1:2917541/91‑1 TTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGT > 1:440629/1‑91 TTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGT > 1:511685/1‑91 TTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGT > 1:813001/1‑91 TTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGT < 1:324806/91‑1 TTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGT > 1:953894/1‑91 TACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTG < 1:4127351/91‑1 TACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTG > 1:1300283/1‑91 TTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTT > 1:4065788/1‑91 TTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTT > 1:4065616/1‑91 ACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAA > 1:2069234/1‑91 TTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCG > 1:675709/1‑91 TTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGT > 1:3692719/1‑91 TTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGT > 1:161229/1‑91 TTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGT > 1:3502853/1‑91 TTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGT > 1:3693080/1‑91 AACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGA < 1:1379276/91‑1 ACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAGCATTGATACAAATCAAGAT < 1:3715827/91‑1 ACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAGCATTGATACAAATCAAGAT < 1:3715817/91‑1 ACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAT > 1:3982017/1‑91 ACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAT > 1:3581342/1‑91 ACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAT > 1:2605942/1‑91 ACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAT > 1:421135/1‑91 AGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTC > 1:758838/1‑91 AGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTC < 1:2118386/91‑1 GTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCT > 1:1827169/1‑91 TGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACCAATCAAGATTCTG > 1:1078983/1‑91 TGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTG > 1:2261851/1‑91 TGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTG > 1:2975799/1‑91 TGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTG > 1:2977039/1‑91 GGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTGA > 1:3520669/1‑91 ACGATTTACTAAGTTCGCTTTTAAATCGATTTTCTTAGCATCTTCCCACTGTTTATCTGTAATGCGTTTATGATAATGCATTAAGTATAAAACAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1519725‑1519629‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTGA > USA300TCH1516_ALE/1519680‑1519769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |