BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1519629 =	109 (1.110)	8 (0.090)	4/144	NT	7.9%	coding (753/2184 nt)	ponA	Penicillin‑binding protein 1A/1B
*	?	USA300TCH1516_ALE	1519680 =	89 (1.010)	8 (0.090)	4/144	NT	7.9%	coding (804/2184 nt)	ponA	Penicillin‑binding protein 1A/1B

Only 100 of 146 total aligned reads displayed.

TATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTGA  >  USA300TCH1516_ALE/1519590‑1519769

  tttATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGa                                                                                         <  1:1720223/91‑1 (MQ=255)

  tttATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGa                                                                                         <  1:1720165/91‑1 (MQ=255)

   ttATGATCATCCAAAAGCTGCTGAAGATCGTAGAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGaa                                                                                        <  1:3539813/91‑1 (MQ=255)

   ttATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGaa                                                                                        <  1:855646/91‑1 (MQ=255)

   aagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGaa                                                                                        >  1:4065788‑M1/37‑91 (MQ=255)

      tGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGAt                                                                                     >  1:3350674/1‑91 (MQ=255)

        atcatcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGc                                                                                   <  1:36542/91‑1 (MQ=255)

         tcatcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCt                                                                                  <  1:692312/91‑1 (MQ=255)

         tcatcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCt                                                                                  >  1:2323424/1‑91 (MQ=255)

           atcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTaa                                                                                <  1:4052128/91‑1 (MQ=255)

           atcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTaa                                                                                <  1:4052670/91‑1 (MQ=255)

            tcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAg                                                                               <  1:2966996/91‑1 (MQ=255)

            tcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAg                                                                               <  1:61098/91‑1 (MQ=255)

             ccAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGa                                                                              <  1:1295028/91‑1 (MQ=255)

             ccAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGa                                                                              <  1:1957789/91‑1 (MQ=255)

              cAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaa                                                                             <  1:645980/91‑1 (MQ=255)

              cAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaa                                                                             >  1:907184/1‑91 (MQ=255)

                aaaGCTGCTGAAGATCGCAAAAACACTGTTTTCTACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaaaa                                                                           <  1:3551519/91‑1 (MQ=255)

                  aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                                                                         <  1:1778823/91‑1 (MQ=255)

                  aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                                                                         >  1:1964492/1‑91 (MQ=255)

                  aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                                                                         >  1:2502971/1‑91 (MQ=255)

                  aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                                                                         >  1:3119524/1‑91 (MQ=255)

                      gctgAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATTGAtt                                                                     >  1:3260652/1‑91 (MQ=255)

                      gctgAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGAtt                                                                     >  1:982651/1‑91 (MQ=255)

                       ctgAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGAttt                                                                    >  1:2934469/1‑91 (MQ=255)

                           aGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTaaaa                                                                <  1:2886920/91‑1 (MQ=255)

                            gATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAg                                                               <  1:2258140/91‑1 (MQ=255)

                            gATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAg                                                               >  1:2040005/1‑91 (MQ=255)

                            gATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAg                                                               >  1:609550/1‑91 (MQ=255)

                             aTCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGc                                                              <  1:2587948/91‑1 (MQ=255)

                               cGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGa                                                            >  1:816086/1‑91 (MQ=255)

                                gTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGaa                                                           <  1:3568677/91‑1 (MQ=255)

                                gTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGaa                                                           <  1:3358262/91‑1 (MQ=255)

                                gTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGaa                                                           >  1:202514/1‑91 (MQ=255)

                                 tAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAAc                                                          <  1:693850/91‑1 (MQ=255)

                                 tAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAAc                                                          <  1:2830908/91‑1 (MQ=255)

                                  aaaaaCACTTTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACt                                                         >  1:2089991/1‑91 (MQ=255)

                                   ttcccactgtttatctgtaatgcgtttatgataatgcattaagtataaaacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACtt                                                        >  1:4065616‑M2/56‑91 (MQ=255)

                                   aaaaGACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACtt                                                        <  1:3459252/91‑1 (MQ=255)

                                   aaaaCACTGTTTTATACTTAATGCACTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACtt                                                        <  1:3864261/91‑1 (MQ=255)

                                     aaCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAg                                                      <  1:1016974/91‑1 (MQ=255)

                                     aaCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAg                                                      >  1:1006540/1‑91 (MQ=255)

                                      acacTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGt                                                     >  1:2356713/1‑91 (MQ=255)

                                      acacTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGt                                                     >  1:2356798/1‑91 (MQ=255)

                                       CACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTa                                                    <  1:4127351‑M1/91‑1 (MQ=255)

                                        ACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTaa                                                   >  1:953894‑M1/1‑91 (MQ=255)

                                        ACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTaa                                                   >  1:813001‑M1/1‑91 (MQ=255)

                                        ACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTaa                                                   >  1:440629‑M1/1‑91 (MQ=255)

                                          TGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGCACTTAGTAAAt                                                 <  1:3761418‑M1/91‑1 (MQ=255)

                                          TGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAAt                                                 >  1:3785407‑M1/1‑91 (MQ=255)

                                          TGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAAt                                                 <  1:22215‑M1/91‑1 (MQ=255)

                                          TGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAAt                                                 <  1:2500961‑M1/91‑1 (MQ=255)

                                          TGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAAt                                                 <  1:974121‑M1/91‑1 (MQ=255)

                                           GTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATc                                                >  1:730394‑M1/1‑91 (MQ=255)

                                            tttatctgtaatgcgtttatgataatgcattaagtataaaacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCg                                               >  1:675709‑M2/47‑91 (MQ=255)

                                             ttatctgtaatgcgtttatgataatgcattaagtataaaacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGt                                              >  1:3502853‑M2/46‑91 (MQ=255)

                                             ttatctgtaatgcgtttatgataatgcattaagtataaaacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGt                                              >  1:3693080‑M2/46‑91 (MQ=255)

                                                   cTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCt                                        >  1:2410682/1‑91 (MQ=255)

                                                   cTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCt                                        <  1:129040/91‑1 (MQ=255)

                                                    ttAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTg                                       <  1:794200/91‑1 (MQ=255)

                                                     tAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTga                                      >  1:3268593/1‑91 (MQ=255)

                                                          cATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAAc                                 <  1:579427/91‑1 (MQ=255)

                                                          cATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAAc                                 <  1:3660344/91‑1 (MQ=255)

                                                          cATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAAc                                 <  1:843494/91‑1 (MQ=255)

                                                             tATCATAGACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTAAAGAACGTc                              <  1:2086962/91‑1 (MQ=255)

                                                             tATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTc                              <  1:3708418/91‑1 (MQ=255)

                                                               tCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCaa                            >  1:1642257/1‑91 (MQ=255)

                                                               tCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCaa                            >  1:177065/1‑91 (MQ=255)

                                                               tCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCaa                            >  1:177570/1‑91 (MQ=255)

                                                               tCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCaa                            <  1:1433790/91‑1 (MQ=255)

                                                                  tAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAAc                         <  1:1696116/91‑1 (MQ=255)

                                                                   aaaCGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACa                        >  1:458753/1‑91 (MQ=255)

                                                                    aaCGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACAt                       >  1:1912073/1‑91 (MQ=255)

                                                                    aaCGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACAt                       >  1:1911312/1‑91 (MQ=255)

                                                                    aaCGCACTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACAt                       >  1:3224789/1‑91 (MQ=255)

                                                                     aCGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTCAAGAACCTCAAAACagt                      >  1:637765/1‑89 (MQ=255)

                                                                        cATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGAt                   >  1:2444194/1‑91 (MQ=255)

                                                                         aTTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATa                  >  1:2877756/1‑91 (MQ=255)

                                                                          ttACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATAc                 >  1:3840946/1‑91 (MQ=255)

                                                                          ttACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATAc                 >  1:2942274/1‑91 (MQ=255)

                                                                           tACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACa                >  1:558108/1‑91 (MQ=255)

                                                                            aCAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACaa               <  1:762669/91‑1 (MQ=255)

                                                                            aCAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACaa               <  1:766559/91‑1 (MQ=255)

                                                                            aCAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACaa               >  1:2779354/1‑91 (MQ=255)

                                                                             cAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACaaa              >  1:2145584/1‑91 (MQ=255)

                                                                             cAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACaaa              >  1:2706601/1‑91 (MQ=255)

                                                                              aGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAAt             >  1:3490026/1‑91 (MQ=255)

                                                                              aGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAAt             >  1:892544/1‑91 (MQ=255)

                                                                               gATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACAGTGATACAAATc            >  1:3762627/1‑91 (MQ=255)

                                                                                 tAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCaa          >  1:4111556/1‑91 (MQ=255)

                                                                                   aacagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGa        <  1:1379276‑M2/84‑1 (MQ=255)

                                                                                    acagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAGCATTGATACAAATCAAGAt       <  1:3715827‑M2/85‑1 (MQ=255)

                                                                                    acagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAt       >  1:3581342‑M2/7‑91 (MQ=255)

                                                                                    acagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAt       >  1:421135‑M2/7‑91 (MQ=255)

                                                                                    acagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAt       >  1:2605942‑M2/7‑91 (MQ=255)

                                                                                    acagtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGAt       >  1:3982017‑M2/7‑91 (MQ=255)

                                                                                      agtgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTc     >  1:758838‑M2/5‑91 (MQ=255)

                                                                                        tgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACCAATCAAGATTCTg   >  1:1078983‑M2/3‑91 (MQ=255)

                                                                                        tgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTg   >  1:2261851‑M2/3‑91 (MQ=255)

                                                                                        tgGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTg   >  1:2975799‑M2/3‑91 (MQ=255)

TATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTAAATCGTACTCCTGAAGAACGTCAAAACATTGATACAAATCAAGATTCTGA  >  USA300TCH1516_ALE/1519590‑1519769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.