BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1519629 =	109 (1.110)	8 (0.090)	4/144	NT	7.9%	coding (753/2184 nt)	ponA	Penicillin‑binding protein 1A/1B
*	?	USA300TCH1516_ALE	1519680 =	89 (1.010)	8 (0.090)	4/144	NT	7.9%	coding (804/2184 nt)	ponA	Penicillin‑binding protein 1A/1B

Only 100 of 151 total aligned reads displayed.

AGCGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTA  >  USA300TCH1516_ALE/1519539‑1519719

tcagaatcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccc                                                                                            >  1:3520669‑M1/91‑91 (MQ=255)

aGCGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAac                                                                                            <  1:3623602/91‑1 (MQ=255)

aGCGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAac                                                                                            >  1:1451389/1‑91 (MQ=255)

aGCGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAac                                                                                            <  1:3956251/91‑1 (MQ=255)

 cagaatcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCa                                                                                           >  1:2977039‑M1/90‑91 (MQ=255)

 cagaatcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCa                                                                                           >  1:2975799‑M1/90‑91 (MQ=255)

 cagaatcttgattggtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCa                                                                                           >  1:1078983‑M1/90‑91 (MQ=255)

  cGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAacac                                                                                          <  1:262953/91‑1 (MQ=255)

  cGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAacac                                                                                          <  1:413533/91‑1 (MQ=255)

   gaatcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACt                                                                                         <  1:2118386‑M1/4‑1 (MQ=255)

   gaatcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACt                                                                                         >  1:758838‑M1/88‑91 (MQ=255)

     atcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGt                                                                                       >  1:421135‑M1/86‑91 (MQ=255)

     atcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGt                                                                                       >  1:3581342‑M1/86‑91 (MQ=255)

     atcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGt                                                                                       >  1:2605942‑M1/86‑91 (MQ=255)

     atcttgatttgtatcaatgctttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGt                                                                                       <  1:3715817‑M1/6‑1 (MQ=255)

      tcttgatttgtatcaatgttttgacgttcttcaggagtacgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGtt                                                                                      <  1:1379276‑M1/7‑1 (MQ=255)

       gaagCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGttt                                                                                     >  1:2666256/1‑91 (MQ=255)

          gCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTtat                                                                                  <  1:1266837/91‑1 (MQ=255)

           cTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTtata                                                                                 <  1:2943322/91‑1 (MQ=255)

            ttATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATAc                                                                                <  1:3139576/91‑1 (MQ=255)

             tATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACt                                                                               >  1:1992630/1‑91 (MQ=255)

              aTTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACtt                                                                              <  1:1621653/91‑1 (MQ=255)

                  aGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATg                                                                          <  1:1741729/91‑1 (MQ=255)

                    ccGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCa                                                                        >  1:1716488/1‑91 (MQ=255)

                    ccGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCa                                                                        >  1:2155257/1‑91 (MQ=255)

                    ccGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCa                                                                        >  1:733925/1‑91 (MQ=255)

                    ccGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCa                                                                        >  1:2872786/1‑91 (MQ=255)

                      ggTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCAtt                                                                      >  1:400698/1‑91 (MQ=255)

                       gTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTa                                                                     >  1:2669702/1‑91 (MQ=255)

                        tttACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTAt                                                                    <  1:1776138/91‑1 (MQ=255)

                         ttACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATc                                                                   >  1:2467557/1‑91 (MQ=255)

                            ccTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATa                                                                >  1:3455315/1‑91 (MQ=255)

                            ccTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATa                                                                >  1:1579715/1‑91 (MQ=255)

                             cTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATaa                                                               <  1:3836581/91‑1 (MQ=255)

                              tCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATaaa                                                              >  1:3761898/1‑91 (MQ=255)

                               cAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAAc                                                             >  1:3809231/1‑91 (MQ=255)

                                aGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACg                                                            <  1:1523127/91‑1 (MQ=255)

                                aGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACg                                                            <  1:1522971/91‑1 (MQ=255)

                                  gTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCa                                                          <  1:3764001/91‑1 (MQ=255)

                                  gTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCa                                                          >  1:3892120/1‑91 (MQ=255)

                                    tCCAAACAACTATAATATTTATGATCATCCAATAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCACTATCATAAACGCAtt                                                        <  1:3540209/91‑1 (MQ=255)

                                    tCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAATCGCAtt                                                        <  1:3232457/91‑1 (MQ=255)

                                    tCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAATCGCAtt                                                        <  1:3232352/91‑1 (MQ=255)

                                      cAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTAc                                                      >  1:1831122/1‑91 (MQ=255)

                                      cAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTAc                                                      >  1:129963/1‑91 (MQ=255)

                                       aaaCAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACa                                                     <  1:1830978/91‑1 (MQ=255)

                                        aacaacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAg                                                    <  1:757378/91‑1 (MQ=255)

                                        aacaacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAg                                                    >  1:3289018/1‑91 (MQ=255)

                                          caacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGAt                                                  <  1:1991363/91‑1 (MQ=255)

                                           aacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATa                                                 >  1:3293950/1‑91 (MQ=255)

                                           aacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATa                                                 >  1:2279961/1‑91 (MQ=255)

                                           aacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATa                                                 >  1:2039447/1‑91 (MQ=255)

                                           aacTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATa                                                 >  1:2279760/1‑91 (MQ=255)

                                            acgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATaa                                                >  1:3502853‑M1/47‑91 (MQ=255)

                                            acgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATaa                                                >  1:161229‑M1/47‑91 (MQ=255)

                                            acgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATaa                                                >  1:3693080‑M1/47‑91 (MQ=255)

                                             cgatttactaagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATaaa                                               >  1:675709‑M1/46‑91 (MQ=255)

                                                taataTTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAg                                            >  1:1614914/1‑91 (MQ=255)

                                                 ttactaagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGt                                           >  1:2069234‑M1/42‑91 (MQ=255)

                                                 aataTTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGAGAAACAGt                                           >  1:2076931/1‑91 (MQ=255)

                                                     tttATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGa                                       <  1:2226415/91‑1 (MQ=255)

                                                     tttATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGa                                       <  1:1720223/91‑1 (MQ=255)

                                                      ttATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGaa                                      <  1:855646/91‑1 (MQ=255)

                                                      aagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGaa                                      >  1:4065788‑M1/37‑91 (MQ=255)

                                                      aagttcgcttttaaatcgattttcttagcatcttccCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGaa                                      >  1:4065616‑M1/37‑91 (MQ=255)

                                                        aTGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGa                                    <  1:746519/91‑1 (MQ=255)

                                                         tGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGAt                                   >  1:3350674/1‑91 (MQ=255)

                                                           atcatcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGc                                 <  1:36542/91‑1 (MQ=255)

                                                            tcatcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCt                                <  1:692312/91‑1 (MQ=255)

                                                            tcatcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCt                                >  1:2324942/1‑91 (MQ=255)

                                                              atcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTaa                              <  1:4052128/91‑1 (MQ=255)

                                                               tcCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAg                             <  1:61098/91‑1 (MQ=255)

                                                                ccAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGa                            <  1:1957789/91‑1 (MQ=255)

                                                                 cAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaa                           <  1:645980/91‑1 (MQ=255)

                                                                 cAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaa                           >  1:907184/1‑91 (MQ=255)

                                                                 cAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaa                           >  1:906369/1‑91 (MQ=255)

                                                                   aaaGCTGCTGAAGATCGCAAAAACACTGTTTTCTACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGaaaa                         <  1:3551519/91‑1 (MQ=255)

                                                                     aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                       >  1:1964492/1‑91 (MQ=255)

                                                                     aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                       <  1:1778823/91‑1 (MQ=255)

                                                                     aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                       >  1:2502971/1‑91 (MQ=255)

                                                                     aGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATc                       >  1:3119524/1‑91 (MQ=255)

                                                                         gctgAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATTGAtt                   >  1:3260652/1‑91 (MQ=255)

                                                                         gctgAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGAtt                   >  1:982651/1‑91 (MQ=255)

                                                                          ctgAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGAttt                  >  1:2934469/1‑91 (MQ=255)

                                                                               gATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAg             >  1:609550/1‑91 (MQ=255)

                                                                               gATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAg             <  1:2258140/91‑1 (MQ=255)

                                                                                  cGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGa          >  1:816086/1‑91 (MQ=255)

                                                                                   gTAAAAACACTGTTTTATACTTAATGCATTATCATAACCGCATTACAGATATACAGTGGGAAGATTCTAAGAAAATCGATTTAAAGGCGaa         >  1:3861919/1‑91 (MQ=255)

                                                                                   gTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGaa         <  1:3568677/91‑1 (MQ=255)

                                                                                   gTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGaa         <  1:3358262/91‑1 (MQ=255)

                                                                                   gTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGaa         >  1:202514/1‑91 (MQ=255)

                                                                                    tAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAAc        <  1:2830908/91‑1 (MQ=255)

                                                                                    tAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAAc        <  1:693629/91‑1 (MQ=255)

                                                                                      aaaaGACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACtt      <  1:3459252/91‑1 (MQ=255)

                                                                                      aaaaCACTGTTTTATACTTAATGCACTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACtt      <  1:3864261/91‑1 (MQ=255)

                                                                                       aaaCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTa     <  1:1707465/91‑1 (MQ=255)

                                                                                        aaCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAg    <  1:1016974/91‑1 (MQ=255)

                                                                                        aaCACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAg    >  1:1006540/1‑91 (MQ=255)

                                                                                         acacTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGt   >  1:2356713/1‑91 (MQ=255)

                                                                                          CACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTa  >  1:1300283‑M1/1‑91 (MQ=255)

AGCGGAAGAAGCTTATTTAGCCGGTTTACCTCAGGTTCCAAACAACTATAATATTTATGATCATCCAAAAGCTGCTGAAGATCGTAAAAACACTGTTTTATACTTAATGCATTATCATAAACGCATTACAGATAAACAGTGGGAAGATGCTAAGAAAATCGATTTAAAAGCGAACTTAGTA  >  USA300TCH1516_ALE/1519539‑1519719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.