| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1535925 | 86 (0.870) | 6 (0.070) | 5/144 | NT | 7.0% | coding (711/1299 nt) | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| ? | USA300TCH1516_ALE | = 1535948 | 82 (0.930) | coding (688/1299 nt) | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase | |||||
CAATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1535828‑1535925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagatTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGTT < USA300TCH1516_ALE/1535948‑1535859 CAATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGC < 1:1917637/91‑1CAATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGC < 1:4084093/91‑1 AATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGTTAAGTGCTGCAACAATAAAGAACGCT > 1:468517/1‑91 ATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTG > 1:3332314/1‑91 ATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTG < 1:16946/91‑1 AATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCA > 1:1269323/1‑91 AATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCA > 1:3800875/1‑91 TACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGA > 1:3008375/1‑91 TACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGA > 1:1792517/1‑91 TACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGA > 1:3910374/1‑91 TACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGA > 1:2967380/1‑91 TCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATT < 1:3819905/91‑1 AACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCA < 1:317776/91‑1 AACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCA < 1:1489127/91‑1 TATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGC < 1:2321709/91‑1 AATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCG < 1:1687483/91‑1 ATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGT < 1:315463/91‑1 TGCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCAT < 1:50940/91‑1 GCAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATA < 1:3413865/91‑1 CAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAA > 1:2969520/1‑91 CAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAA < 1:2567501/91‑1 CAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAA < 1:2468017/91‑1 CAGATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAA < 1:1789337/91‑1 GATTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATG < 1:1214763/91‑1 TTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCCTAATGTT > 1:2063090/1‑91 TTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGTT < 1:307126/91‑1 CAATAATACCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1535828‑1535925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcagatTTTCATGTTCCTGGCGATATTTCATCTGCAGCGTTCTTTATTGTTGCAGCACTTATCACACCAGGAAGTGATGTAACAATTCATAATGTT < USA300TCH1516_ALE/1535948‑1535859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |