BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1535925	86 (0.870)	6 (0.070)	5/144	NT	7.0%	coding (711/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	USA300TCH1516_ALE	= 1535948	82 (0.930)	6 (0.070)	5/144	NT	7.0%	coding (688/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase

Only 100 of 127 total aligned reads displayed.

CCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATT  >  USA300TCH1516_ALE/1535836‑1536015

ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           <  1:795862/91‑1 (MQ=255)

ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           >  1:1110978/1‑91 (MQ=255)

ccTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATg                                                                                           >  1:2825026/1‑91 (MQ=255)

 cTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGa                                                                                          <  1:3709763/91‑1 (MQ=255)

  tGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAATGCTGCAGATGaa                                                                                         >  1:1679761/1‑91 (MQ=255)

  tGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGaa                                                                                         >  1:346820/1‑91 (MQ=255)

   gAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGaaa                                                                                        >  1:1114898/1‑91 (MQ=255)

     aCGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAata                                                                                      <  1:146933/91‑1 (MQ=255)

      cGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAatat                                                                                     >  1:391210/1‑91 (MQ=255)

       gtgtTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATc                                                                                    >  1:3409161/1‑91 (MQ=255)

             gattgattCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAgg                                                                              >  1:701938/1‑91 (MQ=255)

                tgattCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAAc                                                                           <  1:1008914/91‑1 (MQ=255)

                  attCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACAt                                                                         <  1:2600772/91‑1 (MQ=255)

                   ttCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATg                                                                        >  1:247126/1‑91 (MQ=255)

                   ttCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATg                                                                        >  1:2269895/1‑91 (MQ=255)

                   ttCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATg                                                                        >  1:190494/1‑91 (MQ=255)

                   ttCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATg                                                                        >  1:2278988/1‑91 (MQ=255)

                    tCCAACATTATTAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGa                                                                       <  1:3761370/91‑1 (MQ=255)

                    tCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGa                                                                       <  1:1658568/91‑1 (MQ=255)

                       aaCATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttca                                                                    <  1:1489127‑M1/91‑25 (MQ=255)

                       aaCATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttca                                                                    <  1:317776‑M1/91‑25 (MQ=255)

                       aaCATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAa                                                                    <  1:307126‑M2/91‑2 (MQ=255)

                       aaCATTAGGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAa                                                                    >  1:2063090‑M2/1‑90 (MQ=255)

                           ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                >  1:2969520‑M2/1‑86 (MQ=255)

                           ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                <  1:2468017‑M2/91‑6 (MQ=255)

                           ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                <  1:1789337‑M2/91‑6 (MQ=255)

                            tATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttcatctgc                                                               <  1:2321709‑M1/91‑30 (MQ=255)

                               gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAATATGAAAATCTGCAgg                                                            >  1:482159/1‑91 (MQ=255)

                                aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttcatctgcagcg                                                           <  1:1687483‑M1/91‑34 (MQ=255)

                                aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                           >  1:307348/1‑91 (MQ=255)

                                aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                           >  1:306209/1‑91 (MQ=255)

                                aaTTGTGACATCACTTCCTGGTGTGCTACGTGCTGCAACAATAAAGAACGCTGCAGATGAAAGATCGCCAGGAACATGAAAATCTGCAGGt                                                           <  1:1555515/91‑1 (MQ=255)

                                 aTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATtttcatgttcctggcgatatttcatctgcagcgt                                                          <  1:315463‑M1/91‑35 (MQ=255)

                                  ttGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATACAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGttt                                                         >  1:3596336/1‑91 (MQ=255)

                                  ttGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATACAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGttt                                                         >  1:3596410/1‑91 (MQ=255)

                                    gTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTaa                                                       >  1:3907841/1‑91 (MQ=255)

                                        cATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTa                                                   <  1:1738589/91‑1 (MQ=255)

                                        cATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTa                                                   <  1:2263819/91‑1 (MQ=255)

                                         aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                  >  1:3148884/1‑91 (MQ=255)

                                         aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                  >  1:1012584/1‑91 (MQ=255)

                                         aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                  >  1:1325582/1‑91 (MQ=255)

                                         aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                  >  1:1323918/1‑91 (MQ=255)

                                           cACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCg                                                <  1:1917702/91‑1 (MQ=255)

                                           cACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCg                                                <  1:1917490/91‑1 (MQ=255)

                                           cACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCg                                                <  1:1917476/91‑1 (MQ=255)

                                             cTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGaa                                              <  1:3719156/91‑1 (MQ=255)

                                              ttCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAt                                             <  1:1078219/91‑1 (MQ=255)

                                               tCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAtt                                            <  1:1209828/91‑1 (MQ=255)

                                                ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                           >  1:2525539/1‑91 (MQ=255)

                                                ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                           >  1:2584103/1‑91 (MQ=255)

                                                ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                           <  1:4067567/91‑1 (MQ=255)

                                                  tGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCt                                         >  1:27057/1‑91 (MQ=255)

                                                   ggTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCtt                                        >  1:2399996/1‑91 (MQ=255)

                                                   ggTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCtt                                        >  1:2412400/1‑91 (MQ=255)

                                                    gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                       <  1:3832199/91‑1 (MQ=255)

                                                    gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                       >  1:58239/1‑91 (MQ=255)

                                                    gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                       >  1:1426740/1‑91 (MQ=255)

                                                     tgtgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCa                                      <  1:2225609/91‑1 (MQ=255)

                                                       tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                    >  1:2685199/1‑91 (MQ=255)

                                                       tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                    <  1:2576771/91‑1 (MQ=255)

                                                         aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                  >  1:4112374/1‑91 (MQ=255)

                                                         aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                  <  1:2789498/91‑1 (MQ=255)

                                                         aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                  <  1:2789063/91‑1 (MQ=255)

                                                         aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                  >  1:3251080/1‑91 (MQ=255)

                                                          tAAGTGCTGCAACAATAAAGAACGCCGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                 <  1:3855812/91‑1 (MQ=255)

                                                              tgctgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTa                             <  1:1434384/91‑1 (MQ=255)

                                                                 tgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTa                          <  1:2446598/91‑1 (MQ=255)

                                                                 tgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTa                          <  1:2608591/91‑1 (MQ=255)

                                                                    aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                       <  1:906502/91‑1 (MQ=255)

                                                                    aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                       >  1:1225255/1‑91 (MQ=255)

                                                                    aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                       >  1:1225173/1‑91 (MQ=255)

                                                                     acaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTg                      >  1:3054051/1‑91 (MQ=255)

                                                                      caaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGa                     >  1:820959/1‑91 (MQ=255)

                                                                       aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                    <  1:737418/91‑1 (MQ=255)

                                                                       aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                    >  1:4148581/1‑91 (MQ=255)

                                                                       aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTGCAGGGGTTGTATTAATTGAt                    <  1:737296/91‑1 (MQ=255)

                                                                           aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                >  1:287903/1‑91 (MQ=255)

                                                                           aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                >  1:290858/1‑91 (MQ=255)

                                                                           aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGATTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                >  1:3301226/1‑91 (MQ=255)

                                                                            aGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAccc               <  1:1103199/91‑1 (MQ=255)

                                                                            aGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAccc               >  1:3711771/1‑91 (MQ=255)

                                                                             gAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCt              >  1:2963737/1‑91 (MQ=255)

                                                                               aCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTc            >  1:144361/1‑91 (MQ=255)

                                                                                cGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTCATGTATCGAATTGCTTCAGGGGTTGTATTAATCGATAACCCTTCt           >  1:1593149/1‑91 (MQ=255)

                                                                                cGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCt           <  1:338591/91‑1 (MQ=255)

                                                                                 gCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTg          <  1:2091516/91‑1 (MQ=255)

                                                                                  cTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGc         <  1:3405797/91‑1 (MQ=255)

                                                                                   tGCAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcat        <  1:50940‑M1/91‑85 (MQ=255)

                                                                                   tGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCt        >  1:2623519/1‑91 (MQ=255)

                                                                                    gCAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcata       <  1:3413865‑M1/91‑86 (MQ=255)

                                                                                     cAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataa      >  1:2969520‑M1/1‑5 (MQ=255)

                                                                                     cAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataa      <  1:2567501‑M1/91‑87 (MQ=255)

                                                                                     cAGATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataa      <  1:1789337‑M1/91‑87 (MQ=255)

                                                                                      aGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCa     >  1:4074149/1‑91 (MQ=255)

                                                                                       gATtttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatg    <  1:1214763‑M1/91‑89 (MQ=255)

                                                                                         ttttcatgttcctggcgatatttcatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcctaatgtt  >  1:2063090‑M1/1‑1 (MQ=255)

                                                                                         tGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgtt  <  1:1489127‑M2/91‑68 (MQ=255)

                                                                                         tGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgtt  <  1:317776‑M2/91‑68 (MQ=255)

                                                                                         tGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAAtt  >  1:3012666/1‑91 (MQ=255)

                                                                                         tGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAAtt  >  1:475946/1‑91 (MQ=255)

CCTGAACGTGTTGGATTGATTCCAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATT  >  USA300TCH1516_ALE/1535836‑1536015

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.