BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1535925	86 (0.870)	6 (0.070)	5/144	NT	7.0%	coding (711/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase
*	?	USA300TCH1516_ALE	= 1535948	82 (0.930)	6 (0.070)	5/144	NT	7.0%	coding (688/1299 nt)	aroA	3‑phosphoshikimate 1‑carboxyvinyltransferase

Only 100 of 114 total aligned reads displayed.

CAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAT  >  USA300TCH1516_ALE/1535858‑1536038

cAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGaaa                                                                                            >  1:3630043/1‑91 (MQ=255)

 aaCATTAGGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAa                                                                                           >  1:2063090‑M2/1‑90 (MQ=255)

   cATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatc                                                                                         <  1:1214763‑M2/91‑4 (MQ=255)

     ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                                       <  1:1789337‑M2/91‑6 (MQ=255)

     ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                                       >  1:2969520‑M2/1‑86 (MQ=255)

     ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                                       <  1:2468017‑M2/91‑6 (MQ=255)

     ttATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAatctg                                                                                       <  1:2567501‑M2/91‑6 (MQ=255)

         gAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAATATGAAAATCTGCAgg                                                                                   >  1:482159/1‑91 (MQ=255)

          aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                                                  >  1:306209/1‑91 (MQ=255)

          aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                                                  >  1:1348617/1‑91 (MQ=255)

          aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                                                  >  1:307348/1‑91 (MQ=255)

          aaTTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGt                                                                                  <  1:1555707/91‑1 (MQ=255)

          aaTTGTGACATCACTTCCTGGTGTGCTACGTGCTGCAACAATAAAGAACGCTGCAGATGAAAGATCGCCAGGAACATGAAAATCTGCAGGt                                                                                  <  1:1555515/91‑1 (MQ=255)

            ttGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATACAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGttt                                                                                >  1:3596410/1‑91 (MQ=255)

            ttGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATACAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGttt                                                                                >  1:3596336/1‑91 (MQ=255)

              gTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTaa                                                                              >  1:3907841/1‑91 (MQ=255)

                  cATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTa                                                                          <  1:1738589/91‑1 (MQ=255)

                  cATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTa                                                                          <  1:2263819/91‑1 (MQ=255)

                   aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                                         >  1:3148884/1‑91 (MQ=255)

                   aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                                         >  1:1012584/1‑91 (MQ=255)

                   aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                                         >  1:1325582/1‑91 (MQ=255)

                   aTCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTAt                                                                         >  1:1323918/1‑91 (MQ=255)

                     cACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCg                                                                       <  1:1917476/91‑1 (MQ=255)

                     cACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCg                                                                       <  1:1917490/91‑1 (MQ=255)

                     cACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCg                                                                       <  1:1917702/91‑1 (MQ=255)

                       cTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGaa                                                                     <  1:3361711/91‑1 (MQ=255)

                        ttCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAt                                                                    <  1:1078219/91‑1 (MQ=255)

                         tCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAAtt                                                                   <  1:1209828/91‑1 (MQ=255)

                          ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                                                  >  1:2712519/1‑91 (MQ=255)

                          ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                                                  >  1:2584103/1‑91 (MQ=255)

                          ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                                                  >  1:2525539/1‑91 (MQ=255)

                          ccTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTg                                                                  <  1:4067567/91‑1 (MQ=255)

                            tGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCt                                                                >  1:27057/1‑91 (MQ=255)

                             ggTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCtt                                                               >  1:2412400/1‑91 (MQ=255)

                             ggTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCtt                                                               >  1:2399996/1‑91 (MQ=255)

                              gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                                              <  1:3832199/91‑1 (MQ=255)

                              gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                                              >  1:58239/1‑91 (MQ=255)

                              gtgtGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTc                                                              >  1:1426740/1‑91 (MQ=255)

                               tgtgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCa                                                             <  1:2225609/91‑1 (MQ=255)

                                 tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                                           >  1:2999036/1‑91 (MQ=255)

                                 tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                                           <  1:2576771/91‑1 (MQ=255)

                                 tgATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgg                                                           >  1:2685199/1‑91 (MQ=255)

                                   aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                                         >  1:4112374/1‑91 (MQ=255)

                                   aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                                         <  1:2789498/91‑1 (MQ=255)

                                   aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                                         <  1:2789063/91‑1 (MQ=255)

                                   aTAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAgggg                                                         >  1:3251080/1‑91 (MQ=255)

                                    tAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                                        <  1:290132/91‑1 (MQ=255)

                                    tAAGTGCTGCAACAATAAAGAACGCCGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGt                                                        <  1:3855812/91‑1 (MQ=255)

                                     aaGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGtt                                                       >  1:4121487/1‑91 (MQ=255)

                                        tgctgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTa                                                    <  1:1434384/91‑1 (MQ=255)

                                           tgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTa                                                 <  1:2608677/91‑1 (MQ=255)

                                           tgcAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTa                                                 <  1:2608591/91‑1 (MQ=255)

                                             caacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAt                                               <  1:764323/91‑1 (MQ=255)

                                              aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                                              >  1:1225255/1‑91 (MQ=255)

                                              aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                                              >  1:1225173/1‑91 (MQ=255)

                                              aacaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAAtt                                              <  1:906502/91‑1 (MQ=255)

                                               acaaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTg                                             >  1:3054051/1‑91 (MQ=255)

                                                caaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGa                                            >  1:820959/1‑91 (MQ=255)

                                                 aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                                           >  1:4148581/1‑91 (MQ=255)

                                                 aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGAt                                           <  1:737418/91‑1 (MQ=255)

                                                 aaTAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTGCAGGGGTTGTATTAATTGAt                                           <  1:737296/91‑1 (MQ=255)

                                                     aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                                       >  1:290858/1‑91 (MQ=255)

                                                     aaGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGATTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAcc                                       >  1:3301226/1‑91 (MQ=255)

                                                      aGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAccc                                      <  1:1103199/91‑1 (MQ=255)

                                                      aGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAAccc                                      >  1:3711771/1‑91 (MQ=255)

                                                       gAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCt                                     >  1:2963737/1‑91 (MQ=255)

                                                         aCGCTGCAGATGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaat                                   <  1:315463‑M2/91‑58 (MQ=255)

                                                         aCGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTc                                   >  1:145600/1‑91 (MQ=255)

                                                          cGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTCATGTATCGAATTGCTTCAGGGGTTGTATTAATCGATAACCCTTCt                                  >  1:1593149/1‑91 (MQ=255)

                                                          cGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCt                                  <  1:338591/91‑1 (MQ=255)

                                                           gCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTg                                 <  1:2091516/91‑1 (MQ=255)

                                                            cTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGc                                <  1:3405797/91‑1 (MQ=255)

                                                             tGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCt                               >  1:2623519/1‑91 (MQ=255)

                                                              gCAGATGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcata                              <  1:2321709‑M2/91‑63 (MQ=255)

                                                                aGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCa                            >  1:4074149/1‑91 (MQ=255)

                                                                   tGAAATATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgtt                         <  1:1489127‑M2/91‑68 (MQ=255)

                                                                   tGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAAtt                         >  1:475946/1‑91 (MQ=255)

                                                                   tGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAAtt                         >  1:3012666/1‑91 (MQ=255)

                                                                      aaTATCGCCAGGAACATGAAAatctgcagcgttctttattgttgcagcacttatcacaccaggaagtgatgtaacaattcataatgttgga                      <  1:3819905‑M2/91‑71 (MQ=255)

                                                                       atatCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGaa                     >  1:1377319/1‑91 (MQ=255)

                                                                        tatCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAat                    >  1:3704256/1‑91 (MQ=255)

                                                                         atCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAata                   <  1:3351962/91‑1 (MQ=255)

                                                                           cGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATAtt                 <  1:3525604/91‑1 (MQ=255)

                                                                           cGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATAtt                 <  1:3140735/91‑1 (MQ=255)

                                                                           cGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATAtt                 <  1:3140734/91‑1 (MQ=255)

                                                                           cGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATAtt                 >  1:3130304/1‑91 (MQ=255)

                                                                            gCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTa                >  1:2619060/1‑91 (MQ=255)

                                                                               aGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaaaa             >  1:3564541/1‑91 (MQ=255)

                                                                               aGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTaaaa             <  1:3116613/91‑1 (MQ=255)

                                                                                  aaCATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGt          <  1:3940845/91‑1 (MQ=255)

                                                                                   aCATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGtt         <  1:2412129/91‑1 (MQ=255)

                                                                                   aCATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGtt         <  1:2412446/91‑1 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      >  1:1227449/1‑91 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      >  1:1410058/1‑91 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      >  1:1584658/1‑91 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      >  1:3216468/1‑91 (MQ=255)

                                                                                      tGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGa      >  1:162431/1‑91 (MQ=255)

                                                                                       gAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGaa     <  1:511436/91‑1 (MQ=255)

                                                                                          aaTCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAt  >  1:3808700/1‑91 (MQ=255)

                                                                                          aaTCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAt  >  1:3808132/1‑91 (MQ=255)

CAACATTATGAATTGTTACATCACTTCCTGGTGTGATAAGTGCTGCAACAATAAAGAACGCTGCAGATGAAATATCGCCAGGAACATGAAAATCTGCAGGTTTAATGTATCGAATTGCTTCAGGGGTTGTATTAATTGATAACCCTTCTGCTTCAATTGGAATATTAAAATGTTTGAACAT  >  USA300TCH1516_ALE/1535858‑1536038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.