| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1540288 | 92 (0.940) | 10 (0.110) | 8/146 | NT | 10.2% | coding (909/960 nt) | hepT | Heptaprenyl diphosphate synthase component 2 |
| ? | USA300TCH1516_ALE | = 1540309 | 92 (1.030) | coding (888/960 nt) | hepT | Heptaprenyl diphosphate synthase component 2 | |||||
ATATATTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1540191‑1540288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatttcTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < USA300TCH1516_ALE/1540309‑1540221 ATATATTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCA‑TTTTTTCGTCAAACTTAAAAGTAGT < 1:393122/91‑1 ATATTAACAGGTCGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTCGTG > 1:3209270/1‑91 TATTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGA < 1:1467483/91‑1 ATTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGAT < 1:4055946/91‑1 ATTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGAT > 1:3622333/1‑91 TTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATT < 1:3301527/91‑1 TTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATT < 1:1959112/91‑1 TTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATT < 1:2836275/91‑1 TTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATT < 1:3758826/91‑1 TAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTT < 1:3267870/91‑1 AACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAACGTAGTGATTTC > 1:3759285/1‑91 AAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGA < 1:766119/91‑1 TCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATC < 1:2454642/91‑1 TACGTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAA < 1:3341016/91‑1 ACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAA < 1:2218527/91‑1 ACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAA < 1:952908/91‑1 ACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAA < 1:643543/91‑1 TTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAATC < 1:2053008/91‑1 TTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAATCA < 1:849500/91‑1 TTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAATCAC < 1:1895473/91‑1 AATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTT < 1:2555713/91‑1 TGATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAA > 1:1559491/1‑91 TGATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAA > 1:1976635/1‑91 GATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAA < 1:3091607/91‑1 GATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAA < 1:298093/91‑1 GATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAA > 1:1744511/1‑91 GATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAA > 1:1744099/1‑91 ATTTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAG < 1:543529/91‑1 TTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTA > 1:3254863/1‑91 TTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTA > 1:2155644/1‑91 TTCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTA < 1:1623976/91‑1 TCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < 1:2905564/91‑1 TCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < 1:2905307/91‑1 TCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < 1:2517158/91‑1 TCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < 1:2516802/91‑1 TCTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < 1:1844915/91‑1 ATATATTAACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1540191‑1540288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgatttcTGAGTTACCAGATGGACATCCGAAATCACTACTTTTAAGTTTGACGAAAAAAATGGGTTCAAGAAACACGTAGTATTTATGAAAAGTAT < USA300TCH1516_ALE/1540309‑1540221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |