| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1540288 | 92 (0.940) | 10 (0.110) | 8/146 | NT | 10.2% | coding (909/960 nt) | hepT | Heptaprenyl diphosphate synthase component 2 |
| ? | USA300TCH1516_ALE | = 1540309 | 92 (1.030) | coding (888/960 nt) | hepT | Heptaprenyl diphosphate synthase component 2 | |||||
Only 100 of 159 total aligned reads displayed.
AACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGAT > USA300TCH1516_ALE/1540198‑1540378 | aaCAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAACGTAGTGATTTC > 1:3759285‑M1/1‑91 (MQ=255) cAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCgg > 1:687656/1‑91 (MQ=255) cAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCgg < 1:1447150/91‑1 (MQ=255) aGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGa > 1:2407276/1‑91 (MQ=255) aGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGa > 1:439179/1‑91 (MQ=255) gTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTATTCGTCAAACTTAAAAGTAGTGATTTCGGATg > 1:3527099/1‑91 (MQ=255) ttGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTCAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGt > 1:3296136/1‑91 (MQ=255) ggTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTcc > 1:82932/1‑91 (MQ=255) aaaGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATc < 1:2511100/91‑1 (MQ=255) aaaGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATc > 1:1857839/1‑91 (MQ=255) cgcTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGt > 1:719827/1‑91 (MQ=255) cgcTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGt > 1:892180/1‑91 (MQ=255) gcTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTa < 1:762789/91‑1 (MQ=255) tttCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAAc < 1:2321006/91‑1 (MQ=255) ttCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACt < 1:1591394/91‑1 (MQ=255) tCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatc < 1:2454642‑M1/91‑21 (MQ=255) tCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTc > 1:3792294/1‑91 (MQ=255) tCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTc > 1:3749599/1‑91 (MQ=255) tCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTc > 1:1902341/1‑91 (MQ=255) aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga < 1:2905564‑M2/91‑3 (MQ=255) aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga < 1:2517158‑M2/91‑3 (MQ=255) aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga < 1:1844915‑M2/91‑3 (MQ=255) tACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaa > 1:3254863‑M2/1‑88 (MQ=255) tACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaa < 1:1623976‑M2/91‑4 (MQ=255) tACGTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatccgaa < 1:3341016‑M1/91‑25 (MQ=255) aCTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatccgaaa < 1:643543‑M1/91‑26 (MQ=255) aCTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatccgaaa < 1:2218527‑M1/91‑26 (MQ=255) cTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaat < 1:543529‑M2/91‑6 (MQ=255) ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatccgaaatc < 1:2053008‑M1/91‑28 (MQ=255) ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatc < 1:298093‑M2/91‑7 (MQ=255) ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatc > 1:1744511‑M2/1‑85 (MQ=255) ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatc < 1:3091607‑M2/91‑7 (MQ=255) tttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatccgaaatca < 1:849500‑M1/91‑29 (MQ=255) ttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCaa > 1:1822020/1‑91 (MQ=255) cATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAAt > 1:522321/1‑91 (MQ=255) aaaTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCa < 1:3998068/91‑1 (MQ=255) aaTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCtgagttaccagatggacatccgaaatcactacttt < 1:2555713‑M1/91‑36 (MQ=255) aaTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaa < 1:1135337/91‑1 (MQ=255) aaTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaa < 1:3896745/91‑1 (MQ=255) aTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaaa < 1:1800169/91‑1 (MQ=255) aTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaaa < 1:1696838/91‑1 (MQ=255) tactacGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAg < 1:1837058/91‑1 (MQ=255) ctacGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCt < 1:3395415/91‑1 (MQ=255) tacGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCtt > 1:2969382/1‑91 (MQ=255) tgtTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACt < 1:125877/91‑1 (MQ=255) gtTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACtt < 1:1925420/91‑1 (MQ=255) tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa < 1:2131696/91‑1 (MQ=255) tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa < 1:2131009/91‑1 (MQ=255) tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa < 1:1382509/91‑1 (MQ=255) tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa < 1:3238103/91‑1 (MQ=255) tCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTaaa < 1:2885927/91‑1 (MQ=255) cTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAAt < 1:638804/91‑1 (MQ=255) tGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATAc > 1:2346531/1‑91 (MQ=255) gAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACt < 1:1226518/91‑1 (MQ=255) cccATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCg < 1:3130224/91‑1 (MQ=255) ccATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGa > 1:3817773/1‑91 (MQ=255) ccATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGa > 1:340067/1‑91 (MQ=255) tttttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACt < 1:610744/91‑1 (MQ=255) ttttgtCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACtt < 1:3456181/91‑1 (MQ=255) ttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTAc < 1:2198990/91‑1 (MQ=255) ttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTAc < 1:685572/91‑1 (MQ=255) ttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTAc > 1:4123863/1‑91 (MQ=255) ttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTg > 1:714930/1‑91 (MQ=255) tCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCtt < 1:2129456/91‑1 (MQ=255) cAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTa < 1:924196/91‑1 (MQ=255) aaaCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAg > 1:3687507/1‑91 (MQ=255) aCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGcc < 1:3029638/91‑1 (MQ=255) ttAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTc < 1:1330191/91‑1 (MQ=255) tAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCa < 1:204639/91‑1 (MQ=255) aaaaGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCAt > 1:1988563/1‑91 (MQ=255) aaaaGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCAt < 1:384384/91‑1 (MQ=255) aaaGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatt < 1:2555713‑M2/91‑57 (MQ=255) gtagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGAt < 1:1593807/91‑1 (MQ=255) gtagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGAt > 1:364253/1‑91 (MQ=255) gtagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGAt < 1:2275603/91‑1 (MQ=255) tagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATg < 1:641626/91‑1 (MQ=255) tagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATg < 1:643713/91‑1 (MQ=255) tagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATg < 1:3664393/91‑1 (MQ=255) gtGATTTCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaa < 1:1895473‑M2/91‑63 (MQ=255) tGATTTCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaa > 1:1559491‑M1/1‑7 (MQ=255) tGATTTCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaa > 1:1976635‑M1/1‑7 (MQ=255) tGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTg < 1:2345531/91‑1 (MQ=255) gATTTCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaa > 1:1744511‑M1/1‑6 (MQ=255) gATTTCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaa > 1:1744099‑M1/1‑6 (MQ=255) gATTTCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaa < 1:298093‑M1/91‑86 (MQ=255) gATTTCGGATGTCCATCTGGTAACTCAGAAATGAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTATCCTCATCGATGCTGt < 1:3535261/91‑1 (MQ=255) gATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGt < 1:2151382/91‑1 (MQ=255) aTTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTc > 1:4005411/1‑91 (MQ=255) aTTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTc < 1:451163/91‑1 (MQ=255) tttCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagt < 1:952908‑M2/91‑67 (MQ=255) tttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCa < 1:364123/91‑1 (MQ=255) tttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCa < 1:3077447/91‑1 (MQ=255) ttCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagta > 1:2155644‑M1/1‑3 (MQ=255) ttCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaacgta < 1:3341016‑M2/91‑68 (MQ=255) ttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAg < 1:3986322/91‑1 (MQ=255) ttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAg < 1:2807790/91‑1 (MQ=255) tCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagtat < 1:2516802‑M1/91‑90 (MQ=255) tCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagtat < 1:2517158‑M1/91‑90 (MQ=255) tCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagtat < 1:2905307‑M1/91‑90 (MQ=255) tCtgagttaccagatggacatccgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagtat < 1:2905564‑M1/91‑90 (MQ=255) | AACAGGTTGGTAAAGCGCTTTCAATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGAT > USA300TCH1516_ALE/1540198‑1540378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |