BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1540288	92 (0.940)	10 (0.110)	8/146	NT	10.2%	coding (909/960 nt)	hepT	Heptaprenyl diphosphate synthase component 2
*	?	USA300TCH1516_ALE	= 1540309	92 (1.030)	10 (0.110)	8/146	NT	10.2%	coding (888/960 nt)	hepT	Heptaprenyl diphosphate synthase component 2

Only 100 of 133 total aligned reads displayed.

ATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGATACA  >  USA300TCH1516_ALE/1540221‑1540398

aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga                                                                                         <  1:2905564‑M2/91‑3 (MQ=255)

aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga                                                                                         <  1:2905307‑M2/91‑3 (MQ=255)

aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga                                                                                         <  1:1844915‑M2/91‑3 (MQ=255)

aTACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAga                                                                                         <  1:2516802‑M2/91‑3 (MQ=255)

 tACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaa                                                                                        >  1:3254863‑M2/1‑88 (MQ=255)

 tACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaa                                                                                        <  1:1623976‑M2/91‑4 (MQ=255)

    ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatc                                                                                     <  1:3091607‑M2/91‑7 (MQ=255)

    ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatc                                                                                     <  1:298093‑M2/91‑7 (MQ=255)

    ttttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatc                                                                                     >  1:1744511‑M2/1‑85 (MQ=255)

     tttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatca                                                                                    >  1:1976635‑M2/1‑84 (MQ=255)

     tttCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatca                                                                                    >  1:1559491‑M2/1‑84 (MQ=255)

        cATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAAt                                                                                 >  1:1697153/1‑91 (MQ=255)

        cATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAAt                                                                                 >  1:522321/1‑91 (MQ=255)

           aaaTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCa                                                                              <  1:3998068/91‑1 (MQ=255)

            aaTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaa                                                                             <  1:1135337/91‑1 (MQ=255)

             aTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaaa                                                                            <  1:1696838/91‑1 (MQ=255)

             aTACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCaaa                                                                            <  1:1800169/91‑1 (MQ=255)

              tactacGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAg                                                                           <  1:1837058/91‑1 (MQ=255)

                ctacGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCt                                                                         <  1:3395415/91‑1 (MQ=255)

                 tacGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCtt                                                                        >  1:2969382/1‑91 (MQ=255)

                   cGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTa                                                                      >  1:2743509/1‑91 (MQ=255)

                       tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa                                                                  <  1:2131676/91‑1 (MQ=255)

                       tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa                                                                  <  1:2131696/91‑1 (MQ=255)

                       tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa                                                                  <  1:2475101/91‑1 (MQ=255)

                       tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa                                                                  <  1:1382509/91‑1 (MQ=255)

                       tttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTa                                                                  <  1:3238103/91‑1 (MQ=255)

                        ttCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTaa                                                                 >  1:647081/1‑91 (MQ=255)

                         tCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTaaa                                                                <  1:2885927/91‑1 (MQ=255)

                          cTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAAt                                                               <  1:639165/91‑1 (MQ=255)

                          cTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAAt                                                               <  1:638804/91‑1 (MQ=255)

                            tGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATAc                                                             >  1:2346531/1‑91 (MQ=255)

                             gAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACt                                                            <  1:1226518/91‑1 (MQ=255)

                                cccATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCg                                                         <  1:3130224/91‑1 (MQ=255)

                                 ccATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGa                                                        >  1:340067/1‑91 (MQ=255)

                                 ccATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGa                                                        >  1:3817773/1‑91 (MQ=255)

                                    tttttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACt                                                     <  1:610744/91‑1 (MQ=255)

                                    tttttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACt                                                     <  1:2532006/91‑1 (MQ=255)

                                       ttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTAc                                                  <  1:2198990/91‑1 (MQ=255)

                                       ttttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTAc                                                  >  1:4123863/1‑91 (MQ=255)

                                         ttCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTg                                                >  1:714930/1‑91 (MQ=255)

                                          tCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATCCAAAGCTTTACTTAAATACTTCGAACTTACTGc                                               >  1:3399291/1‑91 (MQ=255)

                                            gTCAAACTGAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCt                                             <  1:2005319/91‑1 (MQ=255)

                                             tCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCtt                                            <  1:2129456/91‑1 (MQ=255)

                                              cAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTa                                           <  1:924196/91‑1 (MQ=255)

                                               aaaCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAg                                          >  1:3687507/1‑91 (MQ=255)

                                                 aCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGcc                                        <  1:4032051/91‑1 (MQ=255)

                                                 aCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGcc                                        <  1:3029638/91‑1 (MQ=255)

                                                 aCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGcc                                        >  1:709704/1‑91 (MQ=255)

                                                 aCTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGcc                                        <  1:2973889/91‑1 (MQ=255)

                                                   ttAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTc                                      <  1:1330191/91‑1 (MQ=255)

                                                    tAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCa                                     <  1:3939408/91‑1 (MQ=255)

                                                    tAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCa                                     <  1:204639/91‑1 (MQ=255)

                                                     aaaaGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCAt                                    <  1:384384/91‑1 (MQ=255)

                                                     aaaaGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCAt                                    >  1:1988563/1‑91 (MQ=255)

                                                      aaaGTAGTGATTTCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatt                                   <  1:2555713‑M2/91‑57 (MQ=255)

                                                         gtagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGAt                                <  1:1533543/91‑1 (MQ=255)

                                                         gtagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGAt                                <  1:2275603/91‑1 (MQ=255)

                                                         gtagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGAt                                >  1:364253/1‑91 (MQ=255)

                                                          tagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATg                               <  1:643713/91‑1 (MQ=255)

                                                          tagtGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATg                               <  1:3664393/91‑1 (MQ=255)

                                                            gtGATTTCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaa                             <  1:1895473‑M2/91‑63 (MQ=255)

                                                             tGATTTCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaa                            <  1:849500‑M2/91‑64 (MQ=255)

                                                             tGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTg                            <  1:2345949/91‑1 (MQ=255)

                                                             tGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTg                            <  1:2345531/91‑1 (MQ=255)

                                                              gATTTCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaa                           <  1:2053008‑M2/91‑65 (MQ=255)

                                                              gATTTCGGATGTCCATCTGGTAACTCAGAAATGAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTATCCTCATCGATGCTGt                           <  1:3535261/91‑1 (MQ=255)

                                                              gATTTCGGATGTCCATCTGGTAACTCAGAAATCGAATTCAAAGCTTTACTTAAATACTTTGAACTTACTGCCTTAGCCTCATCGATGCTGt                           <  1:3686351/91‑1 (MQ=255)

                                                              gATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGt                           <  1:2151382/91‑1 (MQ=255)

                                                              gATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGt                           <  1:741984/91‑1 (MQ=255)

                                                               aTTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTc                          <  1:451163/91‑1 (MQ=255)

                                                               aTTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTc                          >  1:4005411/1‑91 (MQ=255)

                                                                tttCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagt                         <  1:952908‑M2/91‑67 (MQ=255)

                                                                tttCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagt                         <  1:2218527‑M2/91‑67 (MQ=255)

                                                                tttCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagt                         <  1:643543‑M2/91‑67 (MQ=255)

                                                                tttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCa                         <  1:364123/91‑1 (MQ=255)

                                                                tttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCa                         <  1:364218/91‑1 (MQ=255)

                                                                tttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCa                         <  1:3077447/91‑1 (MQ=255)

                                                                 ttCGGATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaacgta                        <  1:3341016‑M2/91‑68 (MQ=255)

                                                                 ttCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAg                        <  1:3986322/91‑1 (MQ=255)

                                                                   cGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGAt                      >  1:122857/1‑91 (MQ=255)

                                                                     gATGTCCATCTGGTAACTCAgaaatcactacttttaagtttgacgaaaaaaatgggttcaagaaacacgtagtatttatgaaaagtattga                    <  1:2454642‑M2/91‑72 (MQ=255)

                                                                      aTGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGAtttt                   <  1:163887/91‑1 (MQ=255)

                                                                      aTGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGAtttt                   <  1:125631/91‑1 (MQ=255)

                                                                         tCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTa                <  1:32198/91‑1 (MQ=255)

                                                                         tCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTa                <  1:32229/91‑1 (MQ=255)

                                                                          ccATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTaa               <  1:1405524/91‑1 (MQ=255)

                                                                          ccATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTaa               <  1:3554256/91‑1 (MQ=255)

                                                                          ccATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTaa               <  1:4024571/91‑1 (MQ=255)

                                                                          ccATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTaa               <  1:1406045/91‑1 (MQ=255)

                                                                            aTCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATg             <  1:1635087/91‑1 (MQ=255)

                                                                             tCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGa            >  1:1668287/1‑91 (MQ=255)

                                                                                    aCTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGAt     >  1:3993345/1‑91 (MQ=255)

                                                                                    aCTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGAt     <  1:1774326/91‑1 (MQ=255)

                                                                                    aCTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGAt     >  1:1324295/1‑91 (MQ=255)

                                                                                    aCTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGAt     >  1:515546/1‑91 (MQ=255)

                                                                                     cTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGATa    <  1:152462/91‑1 (MQ=255)

                                                                                     cTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGATa    >  1:3803446/1‑91 (MQ=255)

                                                                                     cTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGATa    <  1:154497/91‑1 (MQ=255)

                                                                                     cTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATATTCTAATGATTTGGATa    >  1:3553140/1‑91 (MQ=255)

                                                                                      tCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGATAc   >  1:4062997/1‑91 (MQ=255)

ATACTTTTCATAAATACTACGTGTTTCTTGAACCCATTTTTTTCGTCAAACTTAAAAGTAGTGATTTCGGATGTCCATCTGGTAACTCAGAAATCAAATTCAAAGCTTTACTTAAATACTTCGAACTTACTGCCTTAGCCTCATCGATGCTGTCAGATTTTCTAATGATTTGGATACA  >  USA300TCH1516_ALE/1540221‑1540398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.