| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1555341 | 82 (0.830) | 6 (0.070) | 4/140 | NT | 7.8% | intergenic (+37/+69) | USA300HOU_RS07605/ribU | Ferredoxin/Riboflavin transporter RibU |
| ? | USA300TCH1516_ALE | = 1555365 | 70 (0.810) | intergenic (+61/+45) | USA300HOU_RS07605/ribU | Ferredoxin/Riboflavin transporter RibU | |||||
CCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1555242‑1555341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcaggTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCAA < USA300TCH1516_ALE/1555365‑1555276 CCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGA < 1:1984019/91‑1 CTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAA > 1:1677352/1‑91 ACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAA < 1:3084892/91‑1 GATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGC < 1:1703242/91‑1 ATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCA > 1:2983600/1‑91 ATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCA > 1:2977391/1‑91 TCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGG > 1:143910/1‑91 TCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGG > 1:2786039/1‑91 TCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGG > 1:2786028/1‑91 TTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGTGACTATCAATAAACGATAGCTTGC < 1:3748601/91‑1 GATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGTGACTATCAATAAACGATAGCTTGCCT < 1:851130/91‑1 GATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGTGACTATCAATAAACGATAGCTTGCCT < 1:803758/91‑1 TGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGTGACTATCAATAAACGATAGCTTGCCTGC < 1:24023/91‑1 TGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGTGACTATCAATAAACGATAGCTTGCCTGC < 1:24380/91‑1 GACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTT < 1:4076937/91‑1 AAAAGCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTC < 1:1714768/91‑1 AAAAGCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTC > 1:4087575/1‑91 AAGCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCC < 1:2529322/91‑1 AAGCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCC < 1:815970/91‑1 AGCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCC < 1:88268/91‑1 GCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCA < 1:1099454/91‑1 GCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCA > 1:1491123/1‑91 GCAGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCA < 1:1099326/91‑1 AGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATC > 1:1458115/1‑91 AGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATC > 1:717828/1‑91 AGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATC > 1:1369188/1‑91 AGGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATC > 1:916918/1‑91 GGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCA > 1:199835/1‑91 GGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCA > 1:3467081/1‑91 GGTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCA > 1:1947038/1‑91 GTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCAA < 1:782996/91‑1 GTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCAA < 1:1143212/91‑1 GTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCAA < 1:1139212/91‑1 CCTACAGATTCTATTAAAATTGCAGACGAATCATTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1555242‑1555341‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaagcaggTGACTATCAATAAACGATAGCTTGCCTGCTTTTTCTATAGAACATTTGTCTAAAAAATCAATTATTCAAATTTTAAAGCGTCCCCATCAA < USA300TCH1516_ALE/1555365‑1555276 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |