BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1555341	82 (0.830)	6 (0.070)	4/140	NT	7.8%	intergenic (+37/+69)	USA300HOU_RS07605/ribU	Ferredoxin/Riboflavin transporter RibU
*	?	USA300TCH1516_ALE	= 1555365	70 (0.810)	6 (0.070)	4/140	NT	7.8%	intergenic (+61/+45)	USA300HOU_RS07605/ribU	Ferredoxin/Riboflavin transporter RibU

Only 100 of 133 total aligned reads displayed.

TTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAAT  >  USA300TCH1516_ALE/1555275‑1555454

tttGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCa                                                                                           >  1:716517/1‑91 (MQ=255)

tttGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCa                                                                                           >  1:1814758/1‑91 (MQ=255)

cgaatttcttgaaaagaatttaatcaaattaaagcaaaataatatacacataataatAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCa                                                                                           >  1:1078483‑M1/58‑91 (MQ=255)

cgaatttcttgaaaagaatttaatcaaattaaagcaaaataatatacacataataatAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCa                                                                                           >  1:1078625‑M1/58‑91 (MQ=255)

cgaatttcttgaaaagaatttaatcaaattaaagcaaaataatatacacataataatAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCa                                                                                           >  1:1078326‑M1/58‑91 (MQ=255)

 ttGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAc                                                                                          <  1:782996‑M2/91‑2 (MQ=255)

 ttGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAc                                                                                          <  1:1139212‑M2/91‑2 (MQ=255)

 ttGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAc                                                                                          <  1:1143212‑M2/91‑2 (MQ=255)

  tGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcc                                                                                         >  1:3467081‑M2/1‑89 (MQ=255)

  tGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcc                                                                                         >  1:199835‑M2/1‑89 (MQ=255)

  tGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcc                                                                                         >  1:1947038‑M2/1‑89 (MQ=255)

  aatttcttgaaaagaatttaatcaaattaaagcaaaataatatacacataataatAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcc                                                                                         >  1:2684118‑M1/56‑91 (MQ=255)

   gATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcct                                                                                        >  1:1369188‑M2/1‑88 (MQ=255)

   gATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcct                                                                                        >  1:1458115‑M2/1‑88 (MQ=255)

   gATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcct                                                                                        >  1:717828‑M2/1‑88 (MQ=255)

     tGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgc                                                                                      >  1:1491123‑M2/1‑86 (MQ=255)

     tGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgc                                                                                      <  1:1099326‑M2/91‑6 (MQ=255)

      tcttgaaaagaatttaatcaaattaaagcaaaataatatacacataataatAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCt                                                                                     >  1:3029296‑M1/52‑91 (MQ=255)

      ggggACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgct                                                                                     <  1:88268‑M2/91‑7 (MQ=255)

       gggACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctt                                                                                    <  1:815970‑M2/91‑8 (MQ=255)

       gggACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctt                                                                                    <  1:2529322‑M2/91‑8 (MQ=255)

         gACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttt                                                                                  <  1:1714768‑M2/91‑10 (MQ=255)

         gACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttt                                                                                  >  1:4087575‑M2/1‑82 (MQ=255)

           cGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTtta                                                                                >  1:534882/1‑91 (MQ=255)

           cGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTtta                                                                                <  1:1830190/91‑1 (MQ=255)

             cTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                              >  1:2914415/1‑91 (MQ=255)

             cTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                              <  1:2109033/91‑1 (MQ=255)

             cTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                              >  1:1961479/1‑91 (MQ=255)

               ttAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttattat                                                                            <  1:2410787/91‑1 (MQ=255)

                tAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttattatt                                                                           <  1:901171/91‑1 (MQ=255)

                 aaaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttattatta                                                                          >  1:1504012/1‑91 (MQ=255)

                  aaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTtattattat                                                                         >  1:306629/1‑91 (MQ=255)

                     tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTAtgtg                                                                      <  1:1876271/91‑1 (MQ=255)

                     tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTAtgtg                                                                      <  1:25032/91‑1 (MQ=255)

                     tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTAtgtg                                                                      <  1:1876375/91‑1 (MQ=255)

                      ttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATgtgt                                                                     >  1:2431954/1‑91 (MQ=255)

                        gAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTGACCTGCTTTTTATTATTATGTGtat                                                                   >  1:2472880/1‑91 (MQ=255)

                         aataatTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGtata                                                                  >  1:160866/1‑91 (MQ=255)

                                  ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                         <  1:2587624/91‑1 (MQ=255)

                                  ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                         >  1:3034809/1‑91 (MQ=255)

                                  ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                         <  1:1763231/91‑1 (MQ=255)

                                  ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                         <  1:2237731/91‑1 (MQ=255)

                                      ttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTa                                                     <  1:2659527/91‑1 (MQ=255)

                                       tAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTaa                                                    >  1:795905/1‑91 (MQ=255)

                                        aGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                   >  1:292319/1‑91 (MQ=255)

                                         gACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAtt                                                  >  1:1870831/1‑91 (MQ=255)

                                           cAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTg                                                >  1:1175965/1‑91 (MQ=255)

                                            aaaTGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGa                                               >  1:2631366/1‑91 (MQ=255)

                                                gTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                           <  1:1207473/91‑1 (MQ=255)

                                                gTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                           <  1:2742475/91‑1 (MQ=255)

                                                 ttCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaaa                                          >  1:2562068/1‑91 (MQ=255)

                                                   cTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAAtt                                        >  1:3076835/1‑91 (MQ=255)

                                                   cTAGAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAAtt                                        <  1:3734281/91‑1 (MQ=255)

                                                     ataGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCt                                      >  1:427141/1‑91 (MQ=255)

                                                      taGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCtt                                     <  1:3622188/91‑1 (MQ=255)

                                                       aGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCttt                                    <  1:2682563/91‑1 (MQ=255)

                                                         AAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTc                                  <  1:544953‑M1/91‑1 (MQ=255)

                                                         AAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTc                                  <  1:544963‑M1/91‑1 (MQ=255)

                                                          aaaaGCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtc                                 <  1:4076937‑M2/91‑59 (MQ=255)

                                                          AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                 >  1:3219011‑M1/1‑91 (MQ=255)

                                                          AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                 >  1:1379751‑M1/1‑91 (MQ=255)

                                                          AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                 <  1:3748534‑M1/91‑1 (MQ=255)

                                                          AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                 >  1:1379839‑M1/1‑91 (MQ=255)

                                                            AAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAg                               <  1:2695987‑M1/91‑1 (MQ=255)

                                                              gCAGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtcccca                             <  1:24380‑M2/91‑63 (MQ=255)

                                                              GCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGaa                             <  1:2910714‑M1/91‑1 (MQ=255)

                                                              GCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGaa                             <  1:1715489‑M1/91‑1 (MQ=255)

                                                                aGGCAAGCTATCGTTTATTGATAGTCAcctgctttttctatagaacatttgtctaaaaaatcaattattcaaattttaaagcgtccccatc                           <  1:803758‑M2/91‑65 (MQ=255)

                                                                AGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAAt                           <  1:1127063‑M1/91‑1 (MQ=255)

                                                                 GGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAAtt                          >  1:2242113‑M1/1‑91 (MQ=255)

                                                                  GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                         >  1:397492‑M1/1‑91 (MQ=255)

                                                                  GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                         <  1:3407834‑M1/91‑1 (MQ=255)

                                                                  GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                         >  1:3453875‑M1/1‑91 (MQ=255)

                                                                  GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                         >  1:3453888‑M1/1‑91 (MQ=255)

                                                                   cAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCg                        <  1:2991607/91‑1 (MQ=255)

                                                                    aaGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGc                       <  1:3194407/91‑1 (MQ=255)

                                                                     aGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCa                      >  1:310057/1‑91 (MQ=255)

                                                                      gCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCaa                     <  1:3291767/91‑1 (MQ=255)

                                                                       cTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAg                    <  1:629565/91‑1 (MQ=255)

                                                                          tCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCt                 >  1:269274/1‑91 (MQ=255)

                                                                           cGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCtt                >  1:311084/1‑91 (MQ=255)

                                                                            gTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTc               <  1:519051/91‑1 (MQ=255)

                                                                            gTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTc               >  1:2475473/1‑91 (MQ=255)

                                                                                aTTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtata           >  1:36832/1‑91 (MQ=255)

                                                                                aTTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtata           <  1:3569907/91‑1 (MQ=255)

                                                                                 ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat          >  1:1123059/1‑91 (MQ=255)

                                                                                 ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat          <  1:2419655/91‑1 (MQ=255)

                                                                                 ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat          <  1:3073032/91‑1 (MQ=255)

                                                                                 ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat          >  1:1122647/1‑91 (MQ=255)

                                                                                  tGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatata         <  1:883054/91‑1 (MQ=255)

                                                                                   gATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAg        >  1:2086901/1‑91 (MQ=255)

                                                                                   gATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAg        >  1:1261905/1‑91 (MQ=255)

                                                                                   gATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAg        <  1:313745/91‑1 (MQ=255)

                                                                                    aTAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGt       <  1:3717930/91‑1 (MQ=255)

                                                                                     tAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTa      >  1:2748135/1‑91 (MQ=255)

                                                                                     tAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTa      <  1:3252746/91‑1 (MQ=255)

                                                                                      aGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTaa     >  1:1453556/1‑91 (MQ=255)

                                                                                      aGTCACCTGCTTTTTATTATTATGTGTATATTATTTTACTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTaa     >  1:2334884/1‑91 (MQ=255)

                                                                                         cACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaat  >  1:322375/1‑91 (MQ=255)

                                                                                         cACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaat  >  1:2087299/1‑91 (MQ=255)

TTTGATGGGGACGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAAT  >  USA300TCH1516_ALE/1555275‑1555454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.