| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1594143 | 74 (0.750) | 14 (0.160) | 7/146 | NT | 16.2% | coding (129/243 nt) | USA300HOU_RS07845 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1594163 | 77 (0.860) | coding (109/243 nt) | USA300HOU_RS07845 | hypothetical protein | |||||
CTGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1594050‑1594143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcacgTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGCAA < USA300TCH1516_ALE/1594163‑1594074 CTGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTGCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGC < 1:4087830/91‑1 TGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCA < 1:71654/91‑1 TGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTACCAACCTGGCA > 1:3761330/1‑91 TTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACG > 1:1035905/1‑91 TTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACG > 1:3812755/1‑91 ATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCAT < 1:1965477/91‑1 TGTTGCTTTATATATATTTCGAGCTCTTCAGCTGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATCACTTTCATGGGCATA < 1:3542033/91‑1 TGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTTTTTTTAACGCTTTGCCAACCTGTCACGTATTACTTTCATGGGCATA < 1:3284981/91‑1 TGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTGTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATA < 1:3284999/91‑1 TGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATA < 1:3661096/91‑1 GTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATAT < 1:2600346/91‑1 GTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATAT < 1:1800604/91‑1 GTTGCTTTATATATATTTCGAGCTCATCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATAT < 1:3867690/91‑1 TTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATATC < 1:3124087/91‑1 TTGCTTTATATATATTTCGAGCCCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATATC < 1:3124018/91‑1 TGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATATCG < 1:3429083/91‑1 GCTTTATGTATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATATCGT < 1:2079737/91‑1 GCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATATCGT < 1:2582659/91‑1 CTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGTATTACTTTCATGGGCATATCGTG < 1:106372/91‑1 TGGCACGTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATA < 1:2254637/91‑1 TGGCACGTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATA < 1:2113434/91‑1 CACGTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAG > 1:4091475/1‑91 ACGTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGC < 1:792360/91‑1 CGTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGCA > 1:3372421/1‑91 GTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGCAA < 1:3700320/91‑1 GTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGCAA < 1:3387650/91‑1 GTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGCAA < 1:2789636/91‑1 CTGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1594050‑1594143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcacgTATTACTTTCATGGGCATATCGTGCCAGGTTGGCAAAGCGTTAAAAAGACATTTGATACTGCTGAAGAGCTCGAAATATATATAAAGCAA < USA300TCH1516_ALE/1594163‑1594074 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |