BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1594143	74 (0.750)	14 (0.160)	7/146	NT	16.2%	coding (129/243 nt)	USA300HOU_RS07845	hypothetical protein
*	?	USA300TCH1516_ALE	= 1594163	77 (0.860)	14 (0.160)	7/146	NT	16.2%	coding (109/243 nt)	USA300HOU_RS07845	hypothetical protein

Only 100 of 112 total aligned reads displayed.

GTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCT  >  USA300TCH1516_ALE/1594073‑1594251

gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                                          >  1:243908/1‑91 (MQ=255)

gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                                          >  1:243968/1‑91 (MQ=255)

gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                                          >  1:635403/1‑91 (MQ=255)

gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                                          >  1:535802/1‑91 (MQ=255)

 ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                                         <  1:2789636‑M2/91‑2 (MQ=255)

 ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                                         <  1:3700320‑M2/91‑2 (MQ=255)

 ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                                         <  1:3387650‑M2/91‑2 (MQ=255)

  tGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcg                                                                                        >  1:3372421‑M2/1‑89 (MQ=255)

   gCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcgt                                                                                       <  1:792360‑M2/91‑4 (MQ=255)

    cTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcgtg                                                                                      >  1:4091475‑M2/1‑87 (MQ=255)

       tatatataTTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcgtgcca                                                                                   <  1:2254637‑M2/91‑8 (MQ=255)

        atatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAAGGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAt                                                                                  <  1:4137383/91‑1 (MQ=255)

        atatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAt                                                                                  <  1:699574/91‑1 (MQ=255)

        atatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAt                                                                                  >  1:433379/1‑91 (MQ=255)

          atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                                                <  1:1839387/91‑1 (MQ=255)

          atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                                                >  1:3755568/1‑91 (MQ=255)

          atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                                                <  1:3914063/91‑1 (MQ=255)

              atTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtacta                                                                            <  1:2602959/91‑1 (MQ=255)

              atTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtacta                                                                            <  1:2148388/91‑1 (MQ=255)

              atTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtacta                                                                            <  1:2148530/91‑1 (MQ=255)

               tttCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtactac                                                                           >  1:1737171/1‑91 (MQ=255)

                ttCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACa                                                                          >  1:671859/1‑91 (MQ=255)

                 tCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACAt                                                                         >  1:2489065/1‑91 (MQ=255)

                  cGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATg                                                                        >  1:599139/1‑91 (MQ=255)

                   gAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGa                                                                       >  1:631923/1‑91 (MQ=255)

                   gAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGa                                                                       >  1:272068/1‑91 (MQ=255)

                     gCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGt                                                                     >  1:3598991/1‑91 (MQ=255)

                     gCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGt                                                                     >  1:1314224/1‑91 (MQ=255)

                      ctctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGtt                                                                    <  1:382153/91‑2 (MQ=255)

                      ctctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGtt                                                                    <  1:384655/91‑2 (MQ=255)

                       tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                                   >  1:2363749/1‑91 (MQ=255)

                       tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                                   >  1:3914839/1‑91 (MQ=255)

                       tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                                   >  1:2363783/1‑91 (MQ=255)

                       tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                                   >  1:2364107/1‑91 (MQ=255)

                        ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                                  >  1:965762/1‑91 (MQ=255)

                        ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                                  >  1:3180204/1‑91 (MQ=255)

                        ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                                  >  1:595100/1‑91 (MQ=255)

                              cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                                            <  1:3508151/91‑1 (MQ=255)

                              cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                                            <  1:3112798/91‑1 (MQ=255)

                                  aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAACGTAATACGTGCATTTTACTACATGAGCATGTGCCACtcgt                                                        >  1:568930/1‑91 (MQ=17)

                                       aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                                   >  1:1701410/1‑91 (MQ=255)

                                       aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                                   >  1:734385/1‑91 (MQ=255)

                                       aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                                   <  1:2447508/91‑1 (MQ=255)

                                       aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTCACTACATGAGTATGTGCCACTcgttcgtt                                                   >  1:3326400/1‑91 (MQ=255)

                                        tGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTa                                                  <  1:2153473/91‑1 (MQ=255)

                                        tGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTa                                                  <  1:3316140/91‑1 (MQ=255)

                                         gTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTAt                                                 <  1:2692323/91‑1 (MQ=255)

                                          tCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATc                                                >  1:2369946/1‑91 (MQ=255)

                                           cTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATcc                                               <  1:4063041/91‑1 (MQ=255)

                                               ttAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGAt                                           >  1:2095767/1‑91 (MQ=255)

                                                 aaCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATAc                                         <  1:1780620/91‑1 (MQ=255)

                                                 aaCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATAc                                         <  1:1780683/91‑1 (MQ=255)

                                                  aCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACa                                        >  1:2571972/1‑91 (MQ=255)

                                                  aCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACa                                        >  1:2571790/1‑91 (MQ=255)

                                                   cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                                       <  1:2446595/91‑1 (MQ=255)

                                                   cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                                       <  1:849018/91‑1 (MQ=255)

                                                     cTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGat                                     >  1:894157/1‑91 (MQ=255)

                                                     cTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGat                                     >  1:893936/1‑91 (MQ=255)

                                                      tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata                                    <  1:3033606/91‑1 (MQ=255)

                                                       ttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCGTGATACAGatat                                   <  1:3178671/91‑1 (MQ=255)

                                                          ccAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtt                                >  1:2527021/1‑91 (MQ=255)

                                                           cAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGTGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCttt                               >  1:756579/1‑91 (MQ=255)

                                                                  gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc                        >  1:504246/1‑91 (MQ=255)

                                                                  gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc                        >  1:3357291/1‑91 (MQ=255)

                                                                  gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc                        >  1:3357237/1‑91 (MQ=255)

                                                                  gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc                        <  1:4080597/91‑1 (MQ=255)

                                                                   cACGATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaag                       <  1:106372‑M2/91‑68 (MQ=255)

                                                                   cACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCg                       <  1:2558079/91‑1 (MQ=255)

                                                                   cACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCg                       >  1:732787/1‑91 (MQ=255)

                                                                    aCGATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatacataaagc                      <  1:2079737‑M2/91‑69 (MQ=255)

                                                                    aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                      >  1:3576636/1‑91 (MQ=255)

                                                                    aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                      >  1:2070177/1‑91 (MQ=255)

                                                                    aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                      <  1:3033534/91‑1 (MQ=255)

                                                                    aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                      >  1:765140/1‑91 (MQ=255)

                                                                    aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                      >  1:3576709/1‑91 (MQ=255)

                                                                     cGATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagca                     <  1:3429083‑M2/91‑70 (MQ=255)

                                                                     cGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGaa                     >  1:1459432/1‑91 (MQ=255)

                                                                     cGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCATTATCCTGATACAGATATCTTTTAGAGCCGaa                     >  1:3408355/1‑91 (MQ=255)

                                                                     cGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCATTATCCTGATACAGATATCTTTTAGAGCCGaa                     >  1:154092/1‑91 (MQ=255)

                                                                      gATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagggctcgaaatatatataaagcaa                    <  1:3124018‑M2/91‑71 (MQ=255)

                                                                      gATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaa                    <  1:3124087‑M2/91‑71 (MQ=255)

                                                                       atatGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgatgagctcgaaatatatataaagcaac                   <  1:3867690‑M2/91‑72 (MQ=255)

                                                                       atatGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaac                   <  1:2600346‑M2/91‑72 (MQ=255)

                                                                       atatGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaac                   <  1:1800604‑M2/91‑72 (MQ=255)

                                                                        tatGCCCATGAAAGTGATAcgtgccaggttggcaaagcgttaaaaagacatttgatacagctgaagagctcgaaatatatataaagcaaca                  <  1:3542033‑M2/91‑73 (MQ=255)

                                                                        tatGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaaca                  <  1:3661096‑M2/91‑73 (MQ=255)

                                                                        tatGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaacacatttgatactgctgaagagctcgaaatatatataaagcaaca                  <  1:3284999‑M2/91‑73 (MQ=255)

                                                                        tatGCCCATGAAAGTAATAcgtgacaggttggcaaagcgttaaaaaaacatttgatactgctgaagagctcgaaatatatataaagcaaca                  <  1:3284981‑M2/91‑73 (MQ=255)

                                                                        tatGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGaaaaa                  <  1:970959/91‑1 (MQ=255)

                                                                         atGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaacat                 <  1:1965477‑M2/91‑74 (MQ=255)

                                                                         atGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAAt                 >  1:3876360/1‑91 (MQ=255)

                                                                              cATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGtt            >  1:4103847/1‑91 (MQ=255)

                                                                               aTGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGttt           >  1:1634093/1‑91 (MQ=255)

                                                                                 gAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTaa         <  1:3878190/91‑1 (MQ=255)

                                                                                   aaGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCTTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGc       <  1:3287099/91‑1 (MQ=255)

                                                                                    aGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCg      <  1:1508624/91‑1 (MQ=255)

                                                                                    aGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCg      >  1:1311774/1‑91 (MQ=255)

                                                                                     gTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGt     <  1:3290448/91‑1 (MQ=255)

                                                                                       aaTACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTc   <  1:3838298/91‑1 (MQ=255)

                                                                                       aaTACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTc   >  1:3394748/1‑91 (MQ=255)

GTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCT  >  USA300TCH1516_ALE/1594073‑1594251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.