BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1594143	74 (0.750)	14 (0.160)	7/146	NT	16.2%	coding (129/243 nt)	USA300HOU_RS07845	hypothetical protein
*	?	USA300TCH1516_ALE	= 1594163	77 (0.860)	14 (0.160)	7/146	NT	16.2%	coding (109/243 nt)	USA300HOU_RS07845	hypothetical protein

Only 100 of 139 total aligned reads displayed.

TTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAA  >  USA300TCH1516_ALE/1594053‑1594233

ttCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACG                                                                                            >  1:1035905‑M1/1‑91 (MQ=255)

ttCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACG                                                                                            >  1:3812755‑M1/1‑91 (MQ=255)

  ccTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGat                                                                                          >  1:3053580/1‑91 (MQ=255)

  ccTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAATATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGat                                                                                          >  1:103662/1‑91 (MQ=255)

   cTCGTATTCCAAACCATGTTGCTTTATATATGTTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGata                                                                                         <  1:3303676/91‑1 (MQ=255)

   cTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGata                                                                                         <  1:918292/91‑1 (MQ=255)

   cTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGata                                                                                         >  1:2297946/1‑91 (MQ=255)

   cTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGata                                                                                         <  1:1672138/91‑1 (MQ=255)

     cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                       <  1:1637122/91‑1 (MQ=255)

     cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                       <  1:4056496/91‑1 (MQ=255)

     cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                       <  1:3665913/91‑1 (MQ=255)

      gTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGc                                                                                      <  1:760615/91‑1 (MQ=255)

       tATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGcc                                                                                     <  1:3771195/91‑1 (MQ=255)

         ttCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCa                                                                                   <  1:2676269/91‑1 (MQ=255)

          tCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCAt                                                                                  <  1:670986/91‑1 (MQ=255)

           ccAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATg                                                                                 <  1:824763/91‑1 (MQ=255)

            cAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGa                                                                                >  1:1014697/1‑91 (MQ=255)

            cAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGa                                                                                >  1:1379376/1‑91 (MQ=255)

               aCCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAg                                                                             >  1:1427058/1‑91 (MQ=255)

                ccATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGt                                                                            >  1:1983801/1‑91 (MQ=255)

                ccATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGt                                                                            <  1:2528648/91‑1 (MQ=255)

                 cATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTa                                                                           >  1:145489/1‑91 (MQ=255)

                  aTGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcat                                                                          <  1:1965477‑M1/91‑19 (MQ=255)

                  aTGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTaa                                                                          >  1:2287658/1‑91 (MQ=255)

                   tGTTGCTTTATATATATTTCGAGCTCTTCAGCTGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtatcactttcatgggcata                                                                         <  1:3542033‑M1/91‑20 (MQ=255)

                   tGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTTTTTTTAACGCTTTGCCAACCTGTCACGtattactttcatgggcata                                                                         <  1:3284981‑M1/91‑20 (MQ=255)

                   tGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcata                                                                         <  1:3661096‑M1/91‑20 (MQ=255)

                    gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatat                                                                        <  1:2600346‑M1/91‑21 (MQ=255)

                    gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatat                                                                        <  1:1800604‑M1/91‑21 (MQ=255)

                    gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                        >  1:243968/1‑91 (MQ=255)

                    gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                        >  1:535802/1‑91 (MQ=255)

                    gTTGCTTTATATATATTTCGAGCTCATCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatat                                                                        <  1:3867690‑M1/91‑21 (MQ=255)

                     ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatatc                                                                       <  1:3124087‑M1/91‑22 (MQ=255)

                     ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                       <  1:3387650‑M2/91‑2 (MQ=255)

                     ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                       <  1:3700320‑M2/91‑2 (MQ=255)

                      tGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatatcg                                                                      <  1:3429083‑M1/91‑23 (MQ=255)

                      tGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcg                                                                      >  1:3372421‑M2/1‑89 (MQ=255)

                       gCTTTATGTATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatatcgt                                                                     <  1:2079737‑M1/91‑24 (MQ=255)

                       gCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGtattactttcatgggcatatcgt                                                                     <  1:2582659‑M1/91‑24 (MQ=255)

                       gCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcgt                                                                     <  1:792360‑M2/91‑4 (MQ=255)

                        cTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcgtg                                                                    >  1:4091475‑M2/1‑87 (MQ=255)

                           tatatataTTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAcgtgcca                                                                 <  1:2113434‑M2/91‑8 (MQ=255)

                            atatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAAGGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAt                                                                <  1:4137383/91‑1 (MQ=255)

                              atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                              <  1:1839387/91‑1 (MQ=255)

                                  atTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtacta                                                          <  1:2148388/91‑1 (MQ=255)

                                  atTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtacta                                                          <  1:2602959/91‑1 (MQ=255)

                                   tttCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtactac                                                         >  1:1737171/1‑91 (MQ=255)

                                    ttCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACa                                                        >  1:671859/1‑91 (MQ=255)

                                      cGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATg                                                      >  1:599139/1‑91 (MQ=255)

                                       gAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGa                                                     >  1:631923/1‑91 (MQ=255)

                                       gAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGa                                                     >  1:272068/1‑91 (MQ=255)

                                         gCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGt                                                   >  1:3598991/1‑91 (MQ=255)

                                         gCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGt                                                   >  1:1314224/1‑91 (MQ=255)

                                         gCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGt                                                   <  1:752900/91‑1 (MQ=255)

                                          ctctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGtt                                                  <  1:384655/91‑2 (MQ=255)

                                           tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                 >  1:3914839/1‑91 (MQ=255)

                                           tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                 >  1:2363749/1‑91 (MQ=255)

                                           tctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAt                                                 >  1:2364107/1‑91 (MQ=255)

                                            ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                >  1:595100/1‑91 (MQ=255)

                                            ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                >  1:3793151/1‑91 (MQ=255)

                                            ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                >  1:3180204/1‑91 (MQ=255)

                                                  cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                          <  1:3112960/91‑1 (MQ=255)

                                                  cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                          <  1:3112798/91‑1 (MQ=255)

                                                           aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                 >  1:1701410/1‑91 (MQ=255)

                                                           aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                 >  1:734385/1‑91 (MQ=255)

                                                           aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                 <  1:2447508/91‑1 (MQ=255)

                                                            tGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTa                                <  1:2153473/91‑1 (MQ=255)

                                                            tGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTa                                <  1:3316140/91‑1 (MQ=255)

                                                              tCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATc                              >  1:2369946/1‑91 (MQ=255)

                                                               cTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATcc                             <  1:4063041/91‑1 (MQ=255)

                                                                     aaCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATAc                       <  1:1780683/91‑1 (MQ=255)

                                                                      aCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACa                      >  1:2571972/1‑91 (MQ=255)

                                                                      aCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACa                      >  1:2571790/1‑91 (MQ=255)

                                                                       cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                     <  1:2446595/91‑1 (MQ=255)

                                                                       cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                     <  1:849018/91‑1 (MQ=255)

                                                                         cTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGat                   >  1:894157/1‑91 (MQ=255)

                                                                          tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata                  <  1:3033606/91‑1 (MQ=255)

                                                                              ccAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtt              >  1:2527021/1‑91 (MQ=255)

                                                                                 aCCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTa           >  1:3468517/1‑91 (MQ=255)

                                                                                    tGGCACGtattactttcatgggcatatcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatata        <  1:2113434‑M1/91‑85 (MQ=255)

                                                                                    tGGCACGtattactttcatgggcatatcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatata        <  1:2254637‑M1/91‑85 (MQ=255)

                                                                                      gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc      >  1:3357291/1‑91 (MQ=255)

                                                                                      gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc      >  1:3357237/1‑91 (MQ=255)

                                                                                      gCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc      >  1:504246/1‑91 (MQ=255)

                                                                                       cACGtattactttcatgggcatatcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaag     >  1:4091475‑M1/1‑4 (MQ=255)

                                                                                       cACGATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaag     <  1:106372‑M2/91‑68 (MQ=255)

                                                                                       cACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCg     >  1:329541/1‑91 (MQ=255)

                                                                                       cACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCg     >  1:732787/1‑91 (MQ=255)

                                                                                        aCGATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatacataaagc    <  1:2079737‑M2/91‑69 (MQ=255)

                                                                                        aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa    >  1:2070177/1‑91 (MQ=255)

                                                                                        aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa    >  1:765140/1‑91 (MQ=255)

                                                                                        aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa    >  1:3576636/1‑91 (MQ=255)

                                                                                        aCGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa    <  1:3033534/91‑1 (MQ=255)

                                                                                         cGATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagca   <  1:3429083‑M2/91‑70 (MQ=255)

                                                                                         cGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCATTATCCTGATACAGATATCTTTTAGAGCCGaa   >  1:154092/1‑91 (MQ=255)

                                                                                          gtattactttcatgggcatatcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaa  <  1:2789636‑M1/91‑91 (MQ=255)

                                                                                          gtattactttcatgggcatatcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaa  <  1:3387650‑M1/91‑91 (MQ=255)

                                                                                          gtattactttcatgggcatatcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaa  <  1:3700320‑M1/91‑91 (MQ=255)

                                                                                          gATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagggctcgaaatatatataaagcaa  <  1:3124018‑M2/91‑71 (MQ=255)

                                                                                          gATATGCCCATGAAAGTAATAcgtgccaggttggcaaagcgttaaaaagacatttgatactgctgaagagctcgaaatatatataaagcaa  <  1:3124087‑M2/91‑71 (MQ=255)

TTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAA  >  USA300TCH1516_ALE/1594053‑1594233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.