| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1600425 = | 109 (1.110) | 14 (0.150) | 10/152 | NT | 12.3% | intergenic (‑61/+205) | USA300HOU_RS07900/USA300HOU_RS07910 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1600453 = | 97 (1.040) | intergenic (‑89/+177) | USA300HOU_RS07900/USA300HOU_RS07910 | hypothetical protein/hypothetical protein | |||||
TTGCGGGATTCGCAAGTATCGCAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1600518‑1600425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACA > USA300TCH1516_ALE/1600453‑1600542 TTGCGGGATTCGCAAGTATCGCAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAAC < 1:3258877/91‑1TTGCGGGATTCGCAAGTATCGCAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAAC > 1:210631/1‑91TTGCGGGATTCGCAAGTATCGCAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAAC > 1:210485/1‑91 TGCGGGATTCGCAAGTATCGCAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACA > 1:1330409/1‑91 GAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTT > 1:1962207/1‑91 ATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGC > 1:2841187/1‑91 AAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAT > 1:872971/1‑91 AAAAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAT > 1:872663/1‑91 AAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCC > 1:1664474/1‑91 AAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCC > 1:2178553/1‑91 AAACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATCC > 1:3967655/1‑91 ACTGCTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCG > 1:654875/1‑91 TGCTACTTGCGTCAACAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCA > 1:116960/1‑91 CTACTTGCGTCAACAAGTAACAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAAT > 1:599065/1‑91 TGCGTCAACAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACC > 1:1932761/1‑91 GCGTCAACAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCA > 1:1451860/1‑91 GCGTCAACAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCA > 1:1206686/1‑91 CGTCAACAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCAT > 1:1797050/1‑91 TTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACA < 1:518924/91‑1 TTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACA > 1:1118825/1‑91 TTGCGGGATTCGCAAGTATCGCAACATTCATATACTACAAAGAATACTTTTATGAAGAATAAAAAAACTGCTACTTGCGTCAACAAGTAACAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1600518‑1600425‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACA > USA300TCH1516_ALE/1600453‑1600542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |