BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1600425 =	109 (1.110)	14 (0.150)	10/152	NT	12.3%	intergenic (‑61/+205)	USA300HOU_RS07900/USA300HOU_RS07910	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1600453 =	97 (1.040)	14 (0.150)	10/152	NT	12.3%	intergenic (‑89/+177)	USA300HOU_RS07900/USA300HOU_RS07910	hypothetical protein/hypothetical protein

Only 100 of 142 total aligned reads displayed.

TAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACA  >  USA300TCH1516_ALE/1600364‑1600542

tAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttt                                                                                          <  1:3438697/91‑1 (MQ=255)

 ggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGttt                                                                                          >  1:1664474‑M1/62‑91 (MQ=255)

  gTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                                                        <  1:642647/91‑1 (MQ=255)

   attcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                                                        >  1:872663‑M1/60‑91 (MQ=255)

   attcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                                                        >  1:872971‑M1/60‑91 (MQ=255)

     gACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGTAGTTTTTTTa                                                                                     >  1:1682060/1‑91 (MQ=255)

       gcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAt                                                                                    >  1:2841187‑M1/56‑91 (MQ=255)

        tACCTCCTTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAACTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                  <  1:3297362/91‑1 (MQ=255)

        tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTaaga                                                                                  >  1:607546/1‑88 (MQ=255)

        tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                  <  1:1030903/91‑1 (MQ=255)

        tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                  <  1:2894780/91‑1 (MQ=255)

        tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                                                  <  1:2604968/91‑1 (MQ=255)

          ccTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttctt                                                                                >  1:3236022/1‑91 (MQ=255)

              cGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATa                                                                            >  1:2639860/1‑91 (MQ=255)

               gTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                                                           <  1:3971076/91‑1 (MQ=255)

                tataTTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaaa                                                                          <  1:2174780/91‑1 (MQ=255)

                  tatTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAg                                                                        <  1:306793/91‑1 (MQ=255)

                  tatTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAg                                                                        <  1:1962878/91‑1 (MQ=255)

                    ttttGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                                                      <  1:2790245/91‑1 (MQ=255)

                    ttttGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                                                      <  1:2790244/91‑1 (MQ=255)

                     tttGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTAt                                                                     >  1:374533/1‑91 (MQ=255)

                         aTTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCtt                                                                 >  1:4061115/1‑91 (MQ=255)

                         aTTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCtt                                                                 <  1:2099669/91‑1 (MQ=255)

                              attaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtag                                                            >  1:474665/1‑91 (MQ=255)

                               ttaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagt                                                           >  1:3258854/1‑91 (MQ=255)

                               ttaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagt                                                           >  1:3258998/1‑91 (MQ=255)

                                 aaGTTGTATATTTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagta                                                          <  1:1867668/91‑1 (MQ=255)

                                  aGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                                                        <  1:1828313/91‑1 (MQ=255)

                                  aGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                                                        >  1:1192509/1‑91 (MQ=255)

                                     tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAATTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                                                     <  1:3303104/91‑1 (MQ=255)

                                     tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                                                     <  1:3527371/91‑1 (MQ=255)

                                     tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTCTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                                                     <  1:3305596/91‑1 (MQ=255)

                                        ata‑tTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATg                                                  >  1:853541/1‑91 (MQ=255)

                                            ttttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTg                                               <  1:3269612/91‑1 (MQ=255)

                                             tttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGc                                              <  1:662692/91‑1 (MQ=255)

                                              ttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTTTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCg                                             <  1:3500229/91‑1 (MQ=255)

                                              ttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCg                                             >  1:1199452/1‑91 (MQ=255)

                                              ttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCg                                             >  1:1199516/1‑91 (MQ=255)

                                                gATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGAt                                           >  1:1717942/1‑91 (MQ=255)

                                                gATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTGCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGAt                                           <  1:170396/91‑1 (MQ=255)

                                                  tAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATAc                                         <  1:1133407/91‑1 (MQ=255)

                                                  tAAATGTTCGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATAc                                         <  1:3051217/91‑1 (MQ=255)

                                                  tAAATGTTCGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATAc                                         <  1:3050995/91‑1 (MQ=255)

                                                   aaaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACt                                        >  1:1349418/1‑91 (MQ=255)

                                                   aaaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTACTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACt                                        >  1:3291319/1‑91 (MQ=255)

                                                   aaaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTACTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACt                                        >  1:3290932/1‑91 (MQ=255)

                                                    gaataaaaaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACtt                                       >  1:1962207‑M2/39‑91 (MQ=255)

                                                     aTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTg                                      <  1:935605/91‑1 (MQ=255)

                                                     aTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTg                                      >  1:3628918/1‑91 (MQ=255)

                                                      tGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGc                                     <  1:2648593/91‑1 (MQ=255)

                                                      tGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGc                                     <  1:2648931/91‑1 (MQ=255)

                                                       gTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCg                                    <  1:1247740/91‑1 (MQ=255)

                                                       gTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCg                                    >  1:2359418/1‑91 (MQ=255)

                                                          tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt                                 <  1:2184982/91‑1 (MQ=255)

                                                          tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt                                 <  1:1605850/91‑1 (MQ=255)

                                                          tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt                                 <  1:2185231/91‑1 (MQ=255)

                                                          aaaaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt                                 >  1:872971‑M2/33‑91 (MQ=255)

                                                           gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATc                                <  1:553295/91‑1 (MQ=255)

                                                           gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATc                                <  1:543825/91‑1 (MQ=255)

                                                            tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATcc                               >  1:288559/1‑91 (MQ=255)

                                                            tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATcc                               <  1:1852393/91‑1 (MQ=255)

                                                            aaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATcc                               >  1:2178553‑M2/31‑91 (MQ=255)

                                                            aaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATcc                               >  1:3967655‑M2/31‑91 (MQ=255)

                                                            aaactgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTCCAATGCTTGCGAATcc                               >  1:1664474‑M2/31‑91 (MQ=255)

                                                              actgctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCg                             >  1:654875‑M2/29‑91 (MQ=255)

                                                                tgctacttgcgtcaacaagtagcagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCa                           >  1:116960‑M2/27‑91 (MQ=255)

                                                                 GTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCaa                          >  1:210485‑M1/1‑91 (MQ=255)

                                                                  ctacttgcgtcaacaagtaacagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAAt                         >  1:599065‑M2/25‑91 (MQ=255)

                                                                   tACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAAtt                        <  1:3917310/91‑1 (MQ=255)

                                                                   tACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAAtt                        <  1:3586830/91‑1 (MQ=255)

                                                                   tACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAAtt                        <  1:3587170/91‑1 (MQ=255)

                                                                     cTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGa                      <  1:1628879/91‑1 (MQ=255)

                                                                      ttgttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGAc                     <  1:2829140/91‑1 (MQ=255)

                                                                      ttgttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGAc                     >  1:3825519/1‑91 (MQ=255)

                                                                       tgttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGAcc                    <  1:1521699/91‑1 (MQ=255)

                                                                       tgttgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGAcc                    <  1:2694109/91‑1 (MQ=255)

                                                                       tgcgtcaacaagtagcagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGAcc                    >  1:1932761‑M2/20‑91 (MQ=255)

                                                                        gcgtcaacaagtagcagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCa                   >  1:1451860‑M2/19‑91 (MQ=255)

                                                                        gcgtcaacaagtagcagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCa                   >  1:1206686‑M2/19‑91 (MQ=255)

                                                                         cgtcaacaagtagcagtTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCAt                  >  1:1797050‑M2/18‑91 (MQ=255)

                                                                          tgACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATg                 <  1:713708/91‑1 (MQ=255)

                                                                           gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGc                <  1:154231/91‑1 (MQ=255)

                                                                           gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGc                <  1:3729035/91‑1 (MQ=255)

                                                                           gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGc                <  1:1863770/91‑1 (MQ=255)

                                                                           gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGc                <  1:1864031/91‑1 (MQ=255)

                                                                           gACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGc                <  1:2837492/91‑1 (MQ=255)

                                                                              gCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGt             >  1:991970/1‑91 (MQ=255)

                                                                              gCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGt             <  1:530199/91‑1 (MQ=255)

                                                                               cAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTa            <  1:2654613/91‑1 (MQ=255)

                                                                                aaGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAg           <  1:2138882/91‑1 (MQ=255)

                                                                                 aGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGt          >  1:3748203/1‑91 (MQ=255)

                                                                                 aGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGt          <  1:786159/91‑1 (MQ=255)

                                                                                 aGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGt          >  1:2098056/1‑91 (MQ=255)

                                                                                 aGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGt          <  1:1420360/91‑1 (MQ=255)

                                                                                   tAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTacttc        <  1:3648370/91‑5 (MQ=255)

                                                                                     gCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAg      >  1:2680387/1‑91 (MQ=255)

                                                                                     gCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAg      >  1:2465180/1‑91 (MQ=255)

                                                                                     gCAGTTTTTTTATTCTTCATAAAAGTATGCTGTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAg      <  1:1328181/91‑1 (MQ=255)

                                                                                         tTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACa  <  1:518924‑M2/90‑1 (MQ=255)

                                                                                         tTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACa  >  1:1118825‑M2/2‑91 (MQ=255)

TAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCCCGCAATTGACCATGCTGTAGTGAAGTACA  >  USA300TCH1516_ALE/1600364‑1600542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.