BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1600425 =	109 (1.110)	14 (0.150)	10/152	NT	12.3%	intergenic (‑61/+205)	USA300HOU_RS07900/USA300HOU_RS07910	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1600453 =	97 (1.040)	14 (0.150)	10/152	NT	12.3%	intergenic (‑89/+177)	USA300HOU_RS07900/USA300HOU_RS07910	hypothetical protein/hypothetical protein

Only 100 of 146 total aligned reads displayed.

ATGTTGTTCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCC  >  USA300TCH1516_ALE/1600335‑1600513

atGTTGTTCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCa                                                                                          <  1:258800/91‑1 (MQ=255)

atGTTGTTCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCa                                                                                          <  1:1441377/91‑1 (MQ=255)

 tgttgtTCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCAc                                                                                         >  1:240569/1‑91 (MQ=255)

 tgtacttcactacagcatggtcaattgcgggattcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaa                                                                                          <  1:518924‑M1/1‑1 (MQ=255)

  gttgttCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACt                                                                                        <  1:2393467/91‑1 (MQ=255)

   ttgttCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTg                                                                                       <  1:2079912/91‑1 (MQ=255)

    tgttCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGt                                                                                      >  1:3338014/1‑91 (MQ=255)

     gttCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGtt                                                                                     <  1:855224/91‑1 (MQ=255)

      ttCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTa                                                                                    <  1:2285795/91‑1 (MQ=255)

      ttCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTa                                                                                    >  1:1399880/1‑91 (MQ=255)

       tCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTAc                                                                                   <  1:1872130/91‑1 (MQ=255)

       tCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTAc                                                                                   <  1:1871931/91‑1 (MQ=255)

       tCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTAc                                                                                   >  1:681261/1‑91 (MQ=255)

          gTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACttg                                                                                <  1:2955654/91‑1 (MQ=255)

            tttAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTCTTACttgtt                                                                              <  1:2082500/91‑1 (MQ=255)

              tAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGa                                                                            <  1:1033594/91‑1 (MQ=255)

               aaTATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGAc                                                                           >  1:3738787/1‑91 (MQ=255)

                atatTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACg                                                                          <  1:1960288/91‑1 (MQ=255)

                 atggtcaattgcgggattcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGCTACTTGTTGACg                                                                          >  1:1797050‑M1/75‑91 (MQ=255)

                  tggtcaattgcgggattcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGCTACTTGTTGACGc                                                                         >  1:1206686‑M1/74‑91 (MQ=255)

                  atTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATCAATGTTTGTCACTGTTACTTGTTGACGCa                                                                        >  1:182576/1‑91 (MQ=255)

                  atTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCa                                                                        >  1:643754/1‑91 (MQ=255)

                   ttttCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCaa                                                                       >  1:2301401/1‑91 (MQ=255)

                   ttttCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCaa                                                                       >  1:984875/1‑91 (MQ=255)

                     ttCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGt                                                                     <  1:2533467/91‑1 (MQ=255)

                      tCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTa                                                                    >  1:1949865/1‑91 (MQ=255)

                      tCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTa                                                                    <  1:992164/91‑1 (MQ=255)

                       cAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAg                                                                   <  1:1347522/91‑1 (MQ=255)

                       cAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAg                                                                   <  1:1557439/91‑1 (MQ=255)

                       cAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAg                                                                   <  1:3792029/91‑1 (MQ=255)

                       cAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAg                                                                   <  1:109014/91‑1 (MQ=255)

                       cAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAg                                                                   <  1:2165355/91‑1 (MQ=255)

                       cAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTCGACGCAAGTAg                                                                   <  1:2415555/91‑1 (MQ=255)

                        attgcgggattcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAg                                                                   >  1:599065‑M1/68‑91 (MQ=255)

                         gCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCa                                                                 >  1:760343/1‑91 (MQ=255)

                          ccATAGTTGACTACCTCCGTATACTTTGACTTAGTTAAGTTGTATA‑TTTTGCTAAATGTTCGTCACTGTTCCTTGTTGACGCAAGTAGCAg                                                                >  1:1837100/1‑91 (MQ=37)

                           cATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGt                                                               >  1:391366/1‑91 (MQ=255)

                            cgggattcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGt                                                               >  1:654875‑M1/64‑91 (MQ=255)

                             tAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttt                                                             <  1:3438697/91‑1 (MQ=255)

                              ggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGttt                                                             >  1:3967655‑M1/62‑91 (MQ=255)

                              ggattcgcaagcattggaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGttt                                                             >  1:1664474‑M1/62‑91 (MQ=255)

                               gTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                           >  1:876340/1‑91 (MQ=255)

                               gTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                           <  1:642647/91‑1 (MQ=255)

                                attcgcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGttttt                                                           >  1:872971‑M1/60‑91 (MQ=255)

                                  gACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGTAGTTTTTTTa                                                        >  1:1682060/1‑91 (MQ=255)

                                    gcaagtatcgcaacattcatatactacaaagaatacttttatgaagaataaaaaaACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAt                                                       >  1:2841187‑M1/56‑91 (MQ=255)

                                     tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTaaga                                                     >  1:607546/1‑88 (MQ=255)

                                     tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                     <  1:1030903/91‑1 (MQ=255)

                                     tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                     >  1:1445298/1‑91 (MQ=255)

                                     tACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttc                                                     <  1:2604968/91‑1 (MQ=255)

                                       ccTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttctt                                                   >  1:3235783/1‑91 (MQ=255)

                                       ccTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTAttctt                                                   >  1:3236022/1‑91 (MQ=255)

                                           cGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATa                                               >  1:2643024/1‑91 (MQ=255)

                                            gTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                              <  1:3971076/91‑1 (MQ=255)

                                            gTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaa                                              <  1:3038447/91‑1 (MQ=255)

                                             tataTTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATaaa                                             <  1:2174780/91‑1 (MQ=255)

                                               tatTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAg                                           <  1:1962878/91‑1 (MQ=255)

                                               tatTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAg                                           <  1:306793/91‑1 (MQ=255)

                                                atTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGt                                          <  1:2755688/91‑1 (MQ=255)

                                                 ttttGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTa                                         <  1:2790245/91‑1 (MQ=255)

                                                  tttGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTAt                                        >  1:374533/1‑91 (MQ=255)

                                                      aTTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCtt                                    <  1:2099669/91‑1 (MQ=255)

                                                      aTTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCtt                                    >  1:4061115/1‑91 (MQ=255)

                                                        ttaattaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTg                                  <  1:4006597/91‑1 (MQ=255)

                                                           attaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtag                               >  1:474665/1‑91 (MQ=255)

                                                            ttaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagt                              >  1:3258998/1‑91 (MQ=255)

                                                            ttaaGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagt                              >  1:3258854/1‑91 (MQ=255)

                                                              aaGTTGTATATTTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTgtagta                             <  1:1867668/91‑1 (MQ=255)

                                                               aGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                           <  1:2664727/91‑1 (MQ=255)

                                                               aGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGtata                           >  1:1192509/1‑91 (MQ=255)

                                                                  tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAATTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                        <  1:3303104/91‑1 (MQ=255)

                                                                  tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAATTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                        <  1:3302364/91‑1 (MQ=255)

                                                                  tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                        <  1:3527371/91‑1 (MQ=255)

                                                                  tGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGa                        <  1:1145402/91‑1 (MQ=255)

                                                                     ata‑tTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATg                     >  1:853541/1‑91 (MQ=255)

                                                                         ttttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTg                  <  1:3269750/91‑1 (MQ=255)

                                                                          tttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGc                 <  1:3699566/91‑1 (MQ=255)

                                                                          tttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGc                 <  1:662692/91‑1 (MQ=255)

                                                                           ttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTTTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCg                <  1:3500229/91‑1 (MQ=255)

                                                                           ttGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCg                >  1:1199452/1‑91 (MQ=255)

                                                                             gATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGAt              >  1:1717942/1‑91 (MQ=255)

                                                                             gATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTGCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGAt              <  1:170396/91‑1 (MQ=255)

                                                                               tAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATAc            <  1:1133407/91‑1 (MQ=255)

                                                                               tAAATGTTCGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATAc            <  1:3051217/91‑1 (MQ=255)

                                                                                aaaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACt           >  1:1349418/1‑91 (MQ=255)

                                                                                aaaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTACTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACt           >  1:3291319/1‑91 (MQ=255)

                                                                                aaaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTACTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACt           >  1:3290932/1‑91 (MQ=255)

                                                                                 aaTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACtt          <  1:744931/91‑1 (MQ=255)

                                                                                  aTGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTg         >  1:3628918/1‑91 (MQ=255)

                                                                                   tGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGc        <  1:2648593/91‑1 (MQ=255)

                                                                                    gTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCg       <  1:1247740/91‑1 (MQ=255)

                                                                                    gTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCg       >  1:2359418/1‑91 (MQ=255)

                                                                                       tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt    <  1:1605850/91‑1 (MQ=255)

                                                                                       tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt    <  1:2185231/91‑1 (MQ=255)

                                                                                       tGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAAt    <  1:2184982/91‑1 (MQ=255)

                                                                                        gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATc   <  1:553295/91‑1 (MQ=255)

                                                                                        gTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATc   <  1:545214/91‑1 (MQ=255)

                                                                                         tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATcc  >  1:3798902/1‑91 (MQ=255)

                                                                                         tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATcc  >  1:288559/1‑91 (MQ=255)

                                                                                         tCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATcc  <  1:1852393/91‑1 (MQ=255)

ATGTTGTTCAGTTTTAATATTTTCAGCCATAGTTGACTACCTCCGTATATTTTGATTTAATTAAGTTGTATA‑TTTTGATAAATGTTTGTCACTGTTACTTGTTGACGCAAGTAGCAGTTTTTTTATTCTTCATAAAAGTATTCTTTGTAGTATATGAATGTTGCGATACTTGCGAATCC  >  USA300TCH1516_ALE/1600335‑1600513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.