| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1614319 = | 93 (0.950) | 8 (0.090) | 6/150 | NT | 8.7% | intergenic (+14/+64) | USA300HOU_RS08000/xerD_3 | hypothetical protein/Tyrosine recombinase XerD |
| ? | USA300TCH1516_ALE | 1614368 = | 81 (0.880) | intergenic (+63/+15) | USA300HOU_RS08000/xerD_3 | hypothetical protein/Tyrosine recombinase XerD | |||||
TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1614411‑1614319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAG > USA300TCH1516_ALE/1614368‑1614456 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTT < 1:686640/91‑1 GTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTT < 1:1130043/91‑1 TATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT < 1:1454399/91‑1 TATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT < 1:1454425/91‑1 TATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT < 1:3432481/91‑1 CAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTGTATGCTCTAGGATGAAATTGGTTAT > 1:2818133/1‑91 AGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAT > 1:2734297/1‑91 TCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTT > 1:340765/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTCTATGCTCTAGGATGAAATTGGTTATACATTTTT > 1:3685692/1‑91 CAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTC > 1:1656287/1‑91 CAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTC > 1:229740/1‑91 AATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCT > 1:2900629/1‑91 AATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAAATGGTTATACATTTTTCT > 1:3552466/1‑91 CTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGG < 1:1385892/91‑1 TTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTA > 1:1056376/1‑91 TTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAG > 1:2103540/1‑91 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1614411‑1614319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAG > USA300TCH1516_ALE/1614368‑1614456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |