BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1614319 =	93 (0.950)	8 (0.090)	6/150	NT	8.7%	intergenic (+14/+64)	USA300HOU_RS08000/xerD_3	hypothetical protein/Tyrosine recombinase XerD
*	?	USA300TCH1516_ALE	1614368 =	81 (0.880)	8 (0.090)	6/150	NT	8.7%	intergenic (+63/+15)	USA300HOU_RS08000/xerD_3	hypothetical protein/Tyrosine recombinase XerD

Only 100 of 115 total aligned reads displayed.

TCAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGTA  >  USA300TCH1516_ALE/1614278‑1614458

tCAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTg                                                                                            <  1:3578334/91‑1 (MQ=255)

ataaccaatttcatcctagagcatacagtgaacaataactcAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTg                                                                                            >  1:2818133‑M1/42‑91 (MQ=255)

 cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           >  1:2897043/1‑91 (MQ=255)

  aaTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAg                                                                                          >  1:333501/1‑91 (MQ=255)

   aTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGTCTTTTCAGt                                                                                         >  1:3726287/1‑91 (MQ=255)

   aTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGt                                                                                         >  1:1483738/1‑91 (MQ=255)

    ttAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGtt                                                                                        <  1:648149/91‑1 (MQ=255)

     tAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTa                                                                                       <  1:3028825/91‑1 (MQ=255)

      aaGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTAt                                                                                      <  1:3417324/91‑1 (MQ=255)

       aGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTAtt                                                                                     >  1:3498255/1‑91 (MQ=255)

        gAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTg                                                                                    >  1:1378396/1‑91 (MQ=255)

         aaaaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGt                                                                                   <  1:2666749/91‑1 (MQ=255)

           aaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTc                                                                                 >  1:750835/1‑91 (MQ=255)

           aaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTc                                                                                 >  1:2857031/1‑91 (MQ=255)

            aCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCa                                                                                >  1:911987/1‑91 (MQ=255)

            aCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCa                                                                                >  1:2318220/1‑91 (MQ=255)

            aCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCa                                                                                >  1:2317934/1‑91 (MQ=255)

            aCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCa                                                                                >  1:910967/1‑91 (MQ=255)

             cATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCAc                                                                               >  1:886450/1‑91 (MQ=255)

             cATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCAc                                                                               >  1:2746122/1‑91 (MQ=255)

             cATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCAc                                                                               >  1:1273284/1‑91 (MQ=255)

              aTAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACAATTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACt                                                                              <  1:3590920/91‑1 (MQ=255)

               tAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             >  1:2910700/1‑91 (MQ=255)

                aGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACttt                                                                            <  1:373667/91‑1 (MQ=255)

                aGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACttt                                                                            >  1:2707853/1‑91 (MQ=255)

                   cGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATg                                                                         >  1:3471606/1‑91 (MQ=255)

                      aattaatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGctc                                                                      >  1:1387355/1‑91 (MQ=255)

                       attaatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGctct                                                                     <  1:3046843/91‑1 (MQ=255)

                         taatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAg                                                                   >  1:1068855/1‑91 (MQ=255)

                         taatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAg                                                                   <  1:3566453/91‑1 (MQ=255)

                         taatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAg                                                                   >  1:3922412/1‑91 (MQ=255)

                          aatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAgg                                                                  <  1:3796949/91‑1 (MQ=255)

                             cAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATg                                                               >  1:398958/1‑91 (MQ=255)

                              aaCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGa                                                              <  1:2404718/91‑1 (MQ=255)

                              aaCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGa                                                              >  1:3692062/1‑91 (MQ=255)

                              aaCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGa                                                              <  1:2707544/91‑1 (MQ=255)

                              aaCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGa                                                              <  1:2751511/91‑1 (MQ=255)

                              aaCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGa                                                              >  1:1153942/1‑91 (MQ=255)

                               aCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGaa                                                             >  1:53959/1‑91 (MQ=255)

                                   aTTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTg                                                         >  1:2584851/1‑91 (MQ=255)

                                       aaaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     >  1:3408206/1‑91 (MQ=255)

                                       aaaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     <  1:1178016/91‑1 (MQ=255)

                                        caaaagtcacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTGTATGCTCTAGGATGAAATTGGTtat                                                    >  1:2818133‑M2/51‑91 (MQ=255)

                                        aaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtat                                                    <  1:3036928/91‑1 (MQ=255)

                                        aaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtat                                                    >  1:2306629/1‑91 (MQ=255)

                                         AAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtata                                                   <  1:1454425‑M1/91‑1 (MQ=255)

                                         AAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtata                                                   <  1:1454399‑M1/91‑1 (MQ=255)

                                          AAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATAc                                                  <  1:1130043‑M1/91‑1 (MQ=255)

                                            agtcacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAt                                                >  1:2734297‑M2/47‑91 (MQ=255)

                                              tcacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttt                                              >  1:340765‑M2/45‑91 (MQ=255)

                                              ccACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttt                                              >  1:3169556/1‑91 (MQ=255)

                                              ccACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttt                                              >  1:3169518/1‑91 (MQ=255)

                                                acaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTCTATGCTCTAGGATGAAATTGGTTATACAttttt                                            >  1:3685692‑M2/43‑91 (MQ=255)

                                                acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            >  1:4050181/1‑91 (MQ=255)

                                                acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  1:2951484/91‑1 (MQ=255)

                                                acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  1:1297844/91‑1 (MQ=255)

                                                acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  1:1048486/91‑1 (MQ=255)

                                                 caatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTc                                           >  1:1656287‑M2/42‑91 (MQ=255)

                                                 caatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTc                                           >  1:229740‑M2/42‑91 (MQ=255)

                                                  aatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCt                                          >  1:2900629‑M2/41‑91 (MQ=255)

                                                  aatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAAATGGTTATACATTTTTCt                                          >  1:3552466‑M2/41‑91 (MQ=255)

                                                      gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      >  1:3159071/1‑91 (MQ=255)

                                                      gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      <  1:3900121/91‑1 (MQ=255)

                                                        acaGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTg                                    <  1:2508550/91‑1 (MQ=255)

                                                        acaGACATTTTTAGTCACGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTg                                    <  1:3555701/91‑1 (MQ=255)

                                                           gACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTgaga                                 <  1:2014222/91‑1 (MQ=255)

                                                            aCATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGAt                                <  1:2585010/91‑1 (MQ=255)

                                                             cATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGAtt                               <  1:3043537/91‑1 (MQ=255)

                                                               tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  1:1051970/91‑1 (MQ=255)

                                                               tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  1:3842154/91‑1 (MQ=255)

                                                               tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  1:3842111/91‑1 (MQ=255)

                                                               tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             >  1:3313794/1‑91 (MQ=255)

                                                                ttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCg                            >  1:1350758/1‑91 (MQ=255)

                                                                ttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCg                            >  1:3894690/1‑91 (MQ=255)

                                                                 tttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGa                           >  1:229262/1‑91 (MQ=255)

                                                                 tttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGa                           <  1:4100337/91‑1 (MQ=255)

                                                                 tttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGa                           <  1:2380386/91‑1 (MQ=255)

                                                                  ttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGaa                          <  1:2106449/91‑1 (MQ=255)

                                                                    aGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAAc                        <  1:2493783/91‑1 (MQ=255)

                                                                     gTCATGTGTATTGTGACTTTTGAGTTATTGTACACTTTATGCTCTAGGATGAAATTGCTTATACATTTTTCTAATTTGAGATTTCGAAACa                       >  1:3689386/1‑91 (MQ=255)

                                                                       cATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtg                     >  1:2956096/1‑91 (MQ=255)

                                                                        aTGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgt                    >  1:1216328/1‑91 (MQ=255)

                                                                         tgtgTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgtg                   <  1:2105727/91‑1 (MQ=255)

                                                                         tgtgTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgtg                   <  1:2101261/91‑1 (MQ=255)

                                                                           tgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGta                 <  1:1035907/91‑1 (MQ=255)

                                                                            gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGCAATTGGTTCTACGTTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  1:3305814/91‑1 (MQ=255)

                                                                            gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  1:752425/91‑1 (MQ=255)

                                                                            gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  1:692122/91‑1 (MQ=255)

                                                                            gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  1:4030257/91‑1 (MQ=255)

                                                                                tgtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATagag            <  1:2855162/91‑1 (MQ=255)

                                                                                 gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           <  1:646439/91‑1 (MQ=255)

                                                                                 gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           <  1:2988193/91‑1 (MQ=255)

                                                                                 gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           >  1:1650623/1‑91 (MQ=255)

                                                                                  tgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGtt          <  1:120832/91‑1 (MQ=255)

                                                                                   gACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTg         >  1:4113007/1‑91 (MQ=255)

                                                                                    aCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTgg        >  1:2541842/1‑91 (MQ=255)

                                                                                       tttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgta     >  1:1056376‑M2/4‑91 (MQ=255)

                                                                                        ttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtag    >  1:2103540‑M2/3‑91 (MQ=255)

                                                                                          gAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtagta  >  1:469162/1‑91 (MQ=255)

                                                                                          gAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtagta  <  1:3361004/91‑1 (MQ=255)

TCAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGTA  >  USA300TCH1516_ALE/1614278‑1614458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.