| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1619603 = | 95 (0.970) | 12 (0.130) | 6/148 | NT | 11.5% | intergenic (+6/+99) | proC/rnz | Pyrroline‑5‑carboxylate reductase/Ribonuclease Z |
| ? | USA300TCH1516_ALE | 1619653 = | 96 (1.060) | intergenic (+56/+49) | proC/rnz | Pyrroline‑5‑carboxylate reductase/Ribonuclease Z | |||||
CAAAGTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1619698‑1619603‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggg‑ttATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAAAAT > USA300TCH1516_ALE/1619653‑1619742 CAAAGTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGC < 1:2352558/91‑1 AAGTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGG > 1:2711710/1‑91 AGTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACTGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG < 1:1130515/91‑1 AGTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG < 1:3142008/91‑1 GTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑T < 1:143400/91‑1 GTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑T > 1:1524617/1‑91 GTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑T < 1:1736651/91‑1 GTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑T < 1:1736718/91‑1 GTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑T > 1:309855/1‑91 GTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑T < 1:2722083/91‑1 TAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TT < 1:2871235/91‑1 ATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGGTTTGTTTTTATAATTTATTGTTATTTGGCAAGCAT > 1:1547800/1‑91 TAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTG > 1:3443327/1‑91 TAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGGTTTGTTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTAT > 1:2850817/1‑91 TAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATT > 1:2188151/1‑91 AAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCA > 1:3341760/1‑91 AAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATCTATTGTTATTTGGCAAGCATTGTTTATCACTTTGTCA > 1:4054081/1‑91 CACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTA > 1:1697485/1‑91 CACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTA > 1:3718079/1‑91 CACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTA > 1:3718942/1‑91 CACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTAATTGGCAAGCATTGTTTATTACTTTGTCATTA > 1:1696489/1‑91 TTGCGATGATGCATACATGTGTTTGACGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTA > 1:2534044/1‑91 TTGCGATGATGCATACATGTG‑TTGGCGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAA > 1:2657839/1‑91 CGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATT > 1:2512280/1‑91 CGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATT > 1:2905702/1‑91 CGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATT > 1:3012153/1‑91 CGGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATT < 1:3268592/91‑1 GGG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTA < 1:726435/91‑1 GG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAA > 1:2822646/1‑91 GG‑TTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAA > 1:4056162/1‑91 TATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAAAAT > 1:997695/1‑91 TATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAAAAT > 1:997752/1‑91 TATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCAGTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAAAAT < 1:3992785/91‑1 CAAAGTAATAAACAATGCTTGCCAAATAACAATAAATTATAAAAATAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTG‑TTGGCGGG‑TT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1619698‑1619603‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggg‑ttATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAATTAAAAT > USA300TCH1516_ALE/1619653‑1619742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |