| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1647574 = | 87 (0.880) | 9 (0.100) | 7/148 | NT | 9.1% | intergenic (+4/+60) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM |
| ? | USA300TCH1516_ALE | 1647624 = | 100 (1.100) | intergenic (+54/+10) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM | |||||
AATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1647668‑1647574‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAT > USA300TCH1516_ALE/1647624‑1647712 AATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGTAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TT < 1:3501629/91‑1 TATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTT < 1:3876924/91‑1 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 1:890999/1‑91 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 1:4001119/1‑91 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 1:3503250/1‑91 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 1:1098584/1‑91 AAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGAT > 1:2111167/1‑91 AAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATA > 1:781905/1‑91 AAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACAACTTTCTAAACATCCATTCATCTGAACGATAT > 1:3545976/1‑91 AATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATT > 1:2875549/1‑91 ATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATT > 1:2500281/1‑91 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTT > 1:2887932/1‑91 AGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTC > 1:165603/1‑91 GACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCT > 1:1278706/1‑91 GACTATTTTACCTACAAGTGCTTCCG‑TTTTTTAATCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCT > 1:1334888/1‑91 TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGT > 1:3067126/1‑91 TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGT > 1:1937659/1‑91 TTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTT > 1:2280223/1‑91 TTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTT > 1:2280169/1‑91 TTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTGCTGTTA > 1:1387210/1‑91 TTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAA < 1:302468/91‑1 TTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAA > 1:3904635/1‑91 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAT < 1:3065999/91‑1 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAT < 1:1865103/91‑1 AATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1647668‑1647574‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAT > USA300TCH1516_ALE/1647624‑1647712 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |