BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1647574 =	87 (0.880)	9 (0.100)	7/148	NT	9.1%	intergenic (+4/+60)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM
*	?	USA300TCH1516_ALE	1647624 =	100 (1.100)	9 (0.100)	7/148	NT	9.1%	intergenic (+54/+10)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM

Only 100 of 145 total aligned reads displayed.

TGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTC  >  USA300TCH1516_ALE/1647536‑1647714

 gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                         <  1:2386854/91‑1 (MQ=255)

  cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                        <  1:3958984/91‑1 (MQ=255)

  cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                        >  1:3714896/1‑91 (MQ=255)

     aaGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaa                                                                                     <  1:2932899/91‑1 (MQ=255)

      aGTATAAAAGAAATCAAAGAAGAAAATAGTTGAAAAAACGGAAGCACTTGTAGGTAAGATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                                    <  1:3316790/91‑1 (MQ=255)

      aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                                    <  1:1220339/91‑1 (MQ=255)

      aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                                    >  1:1524024/1‑91 (MQ=255)

         ataAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAact                                                                                 >  1:4071130/1‑91 (MQ=255)

          taAAAGAAATCAAAGAAGAAAATAGATAAAAAAACCGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAacta                                                                                <  1:1898878/91‑1 (MQ=255)

              aGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                                                                            >  1:2828592/1‑91 (MQ=255)

              aGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                                                                            <  1:2550508/91‑1 (MQ=255)

               gAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTc                                                                           >  1:1646496/1‑91 (MQ=255)

                aaaTCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                                                                          <  1:1709598/91‑1 (MQ=255)

                aaaTCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCGACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                                                                          <  1:637630/91‑1 (MQ=255)

                 aaTCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTa                                                                         >  1:1503489/1‑91 (MQ=255)

                    cAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                                      >  1:686399/1‑91 (MQ=255)

                    cAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                                      >  1:3357311/1‑91 (MQ=255)

                            aaaaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTc                                                              >  1:2226786/1‑91 (MQ=255)

                               aTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCGTTCATc                                                           <  1:3013929/91‑1 (MQ=255)

                               aTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc                                                           <  1:3558308/91‑1 (MQ=255)

                                 aGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg                                                         <  1:4024087/91‑1 (MQ=255)

                                    tAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      <  1:152817/91‑1 (MQ=255)

                                    tAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      <  1:1017605/91‑1 (MQ=255)

                                    tAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCACCTGAAc                                                      <  1:283323/91‑1 (MQ=255)

                                      AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  1:4001119‑M1/1‑91 (MQ=255)

                                      AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  1:890999‑M1/1‑91 (MQ=255)

                                      AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  1:1098584‑M1/1‑91 (MQ=255)

                                       aaaatggaagcacgtagactattttacctacaagtgcttccgtttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGat                                                   >  1:2111167‑M2/50‑91 (MQ=255)

                                        aaaatggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                                  >  1:781905‑M2/49‑91 (MQ=255)

                                        AAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                                  <  1:3876924‑M1/91‑1 (MQ=255)

                                         aaatggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACAACTTTCTAAACATCCATTCATCTGAACGatat                                                 >  1:3545976‑M2/48‑91 (MQ=255)

                                          atggaagcacgtagactattttacctacaagtgcttccgtttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtt                                                >  1:2500281‑M2/47‑91 (MQ=255)

                                          aatggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtt                                                >  1:2875549‑M2/47‑91 (MQ=255)

                                          AACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTACATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtt                                                <  1:3501629‑M1/91‑1 (MQ=255)

                                            tggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:2887932‑M2/45‑91 (MQ=255)

                                            cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:1934714/1‑91 (MQ=255)

                                            cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:2456005/1‑91 (MQ=255)

                                                aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          <  1:3697191/91‑1 (MQ=255)

                                                 gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  1:847831/91‑1 (MQ=255)

                                                 gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  1:847246/91‑1 (MQ=255)

                                                 gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  1:1301557/91‑1 (MQ=255)

                                                 gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  1:1741214/91‑1 (MQ=255)

                                                    cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                                      <  1:2319612/91‑1 (MQ=255)

                                                    cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                                      <  1:2319570/91‑1 (MQ=255)

                                                    cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                                      >  1:3029633/1‑91 (MQ=255)

                                                      tGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAtt                                    >  1:3619330/1‑91 (MQ=255)

                                                      tGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAtt                                    <  1:1461123/91‑1 (MQ=255)

                                                       agactattttacctacaagtgcttccattttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttc                                   >  1:165603‑M2/34‑91 (MQ=255)

                                                        gactattttacctacaagtgcttccgttttttAATCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttct                                  >  1:1334888‑M2/33‑91 (MQ=255)

                                                         aGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttctt                                 >  1:1855269/1‑91 (MQ=255)

                                                          ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTTAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                                <  1:3597597/91‑1 (MQ=255)

                                                          ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                                >  1:1915057/1‑91 (MQ=255)

                                                          ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                                >  1:1914954/1‑91 (MQ=255)

                                                             aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                             >  1:587607/1‑91 (MQ=255)

                                                             aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                             <  1:172598/91‑1 (MQ=255)

                                                              aaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACt                            >  1:992659/1‑91 (MQ=255)

                                                               aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                           <  1:957109/91‑1 (MQ=255)

                                                                aTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTc                          >  1:2369854/1‑91 (MQ=255)

                                                                 tAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCt                         <  1:563601/91‑1 (MQ=255)

                                                                  aGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTg                        <  1:192008/91‑1 (MQ=255)

                                                                   gTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGc                       >  1:3086561/1‑91 (MQ=255)

                                                                    tCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGcc                      >  1:122146/1‑91 (MQ=255)

                                                                     cTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCa                     >  1:2344949/1‑91 (MQ=255)

                                                                     cTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCa                     >  1:161262/1‑91 (MQ=255)

                                                                      tACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCaa                    <  1:1127598/91‑1 (MQ=255)

                                                                      tACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCaa                    >  1:1336582/1‑91 (MQ=255)

                                                                       aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt                   <  1:4067824/91‑1 (MQ=255)

                                                                       aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt                   >  1:3805979/1‑91 (MQ=255)

                                                                        cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCCGTTAATTCTTCCACTTCTGCCAAtt                  >  1:3848737/1‑91 (MQ=255)

                                                                         gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  1:1279419/91‑1 (MQ=255)

                                                                         gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 >  1:4042115/1‑91 (MQ=255)

                                                                         gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  1:1824129/91‑1 (MQ=255)

                                                                         gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  1:1278830/91‑1 (MQ=255)

                                                                         gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  1:1026384/91‑1 (MQ=255)

                                                                         gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg                 <  1:1026313/91‑1 (MQ=255)

                                                                          tGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGa                >  1:2190767/1‑91 (MQ=255)

                                                                           gCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAg               <  1:968634/91‑1 (MQ=255)

                                                                            cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc              <  1:3701884/91‑1 (MQ=255)

                                                                            cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc              <  1:3373876/91‑1 (MQ=255)

                                                                             ttCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCt             <  1:3180/91‑1 (MQ=255)

                                                                              tCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCtt            >  1:2646310/1‑91 (MQ=255)

                                                                              tCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCtt            <  1:4046364/91‑1 (MQ=255)

                                                                               ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           >  1:3238420/1‑91 (MQ=255)

                                                                               ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           <  1:231981/91‑1 (MQ=255)

                                                                               ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           <  1:740754/91‑1 (MQ=255)

                                                                                cATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCt          >  1:3476776/1‑91 (MQ=255)

                                                                                cATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCt          >  1:770117/1‑91 (MQ=255)

                                                                                cATTTTTTATTCCAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCctct          >  1:3208516/1‑91 (MQ=255)

                                                                                cATTTTTTATTCCAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCctct          >  1:3208565/1‑91 (MQ=255)

                                                                                 aTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg         >  1:1778354/1‑91 (MQ=255)

                                                                                 aTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg         >  1:1776011/1‑91 (MQ=255)

                                                                                  ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGt        >  1:1937659‑M2/7‑91 (MQ=255)

                                                                                  ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGt        >  1:3067126‑M2/7‑91 (MQ=255)

                                                                                   tttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGtt       >  1:2280223‑M2/6‑91 (MQ=255)

                                                                                   tttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGtt       >  1:2280169‑M2/6‑91 (MQ=255)

                                                                                    ttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTGCTGTTa      >  1:1387210‑M2/5‑91 (MQ=255)

                                                                                     tttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTaa     >  1:3904635‑M2/4‑91 (MQ=255)

                                                                                     tttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTaa     <  1:302468‑M2/88‑1 (MQ=255)

                                                                                      ttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAt    <  1:1865103‑M2/89‑1 (MQ=255)

                                                                                        aTTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTc  >  1:2028960/1‑91 (MQ=255)

TGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTC  >  USA300TCH1516_ALE/1647536‑1647714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.