BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1647574 =	87 (0.880)	9 (0.100)	7/148	NT	9.1%	intergenic (+4/+60)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM
*	?	USA300TCH1516_ALE	1647624 =	100 (1.100)	9 (0.100)	7/148	NT	9.1%	intergenic (+54/+10)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM

Only 100 of 168 total aligned reads displayed.

TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGA  >  USA300TCH1516_ALE/1647485‑1647664

tttATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCACAGAAGAAAATAGAT‑AAA                                                                                            >  1:3550561‑M1/1‑91 (MQ=255)

tttATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA                                                                                            <  1:1887798‑M1/91‑1 (MQ=255)

tttATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA                                                                                            <  1:3169088‑M1/91‑1 (MQ=255)

 attaacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataa                                                                                            <  1:3065999‑M1/2‑1 (MQ=255)

  ttaacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaa                                                                                           <  1:302468‑M1/3‑1 (MQ=255)

  ttaacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaa                                                                                           >  1:3904635‑M1/89‑91 (MQ=255)

   taacagcagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaa                                                                                          >  1:1387210‑M1/88‑91 (MQ=255)

   attattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA                                                                                         <  1:404240‑M1/91‑1 (MQ=255)

    ttattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑aaaaaaa                                                                                        <  1:1173507/91‑1 (MQ=255)

    ttattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑aaaaaaa                                                                                        <  1:1168726/91‑1 (MQ=255)

    aacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaa                                                                                         >  1:2280223‑M1/87‑91 (MQ=255)

    aacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaa                                                                                         >  1:2280169‑M1/87‑91 (MQ=255)

     tattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑c                                                                                      >  1:2749694/1‑91 (MQ=255)

     acagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaaa                                                                                        >  1:1937659‑M1/86‑91 (MQ=255)

         tcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGaa                                                                                  <  1:590887/91‑1 (MQ=255)

         tcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGaa                                                                                  <  1:111451/91‑1 (MQ=255)

          cttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAg                                                                                 >  1:2716985/1‑91 (MQ=255)

             cATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCAc                                                                              >  1:3007255/1‑91 (MQ=255)

                cTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTg                                                                           >  1:136006/1‑91 (MQ=255)

                cTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTg                                                                           >  1:1322896/1‑91 (MQ=255)

                 ttAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGt                                                                          >  1:313475/1‑91 (MQ=255)

                 ttAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGt                                                                          >  1:2544128/1‑91 (MQ=255)

                 ttAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGt                                                                          >  1:2952503/1‑91 (MQ=255)

                   aaCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAg                                                                        >  1:2175394/1‑91 (MQ=255)

                   aaCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAg                                                                        >  1:2760754/1‑91 (MQ=255)

                    aCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGCAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGCAAGCACTTGTAgg                                                                       >  1:4143951/1‑91 (MQ=255)

                    aCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGCAgg                                                                       >  1:3266556/1‑91 (MQ=255)

                        aaGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTaaa                                                                   <  1:2590942/91‑1 (MQ=255)

                          gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAAt                                                                 <  1:1242896/91‑1 (MQ=255)

                          gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAAt                                                                 >  1:4113301/1‑91 (MQ=255)

                            ccAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAg                                                               <  1:3842803/91‑1 (MQ=255)

                            ccAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAg                                                               <  1:1457905/91‑1 (MQ=255)

                               agaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagattAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTc                                                             >  1:1334888‑M1/60‑91 (MQ=255)

                               agaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTc                                                             >  1:1278706‑M1/60‑91 (MQ=255)

                               aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCt                                                            >  1:3089904/1‑91 (MQ=255)

                               aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCt                                                            >  1:3089869/1‑91 (MQ=255)

                                gaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑TGGAAGCACTTGTAGGTAAAATAGTCt                                                            >  1:165603‑M1/59‑91 (MQ=255)

                                cGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTa                                                           >  1:2877529/1‑91 (MQ=255)

                                 gCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTAc                                                          >  1:453814/1‑91 (MQ=255)

                                     atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgct                                                       <  1:745831‑M1/91‑35 (MQ=255)

                                     atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGc                                                      <  1:3234437/91‑1 (MQ=255)

                                      tatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCt                                                     <  1:3653644/91‑1 (MQ=255)

                                       atCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCtt                                                    >  1:3185745/1‑91 (MQ=255)

                                       atCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCtt                                                    <  1:183999/91‑1 (MQ=255)

                                        tCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                   <  1:3838105/91‑1 (MQ=255)

                                          gCAAAGCTATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                 <  1:2070302/91‑1 (MQ=255)

                                          gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                 <  1:1948963/91‑1 (MQ=255)

                                           cAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAt                                                >  1:371174‑M2/1‑90 (MQ=255)

                                            aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                               >  1:90748‑M2/1‑89 (MQ=255)

                                            aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                               <  1:2065295‑M2/91‑3 (MQ=255)

                                            aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                               <  1:1423947‑M2/91‑3 (MQ=255)

                                            aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                               >  1:2107676‑M2/1‑89 (MQ=255)

                                             aatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAt                                                >  1:2500281‑M1/46‑91 (MQ=255)

                                             aaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt                                              <  1:1904349‑M2/91‑4 (MQ=255)

                                              aGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt                                             <  1:3312605‑M2/91‑5 (MQ=255)

                                               tatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt                                             >  1:781905‑M1/44‑91 (MQ=255)

                                               gCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttt                                            >  1:453108‑M2/1‑86 (MQ=255)

                                                 aaTGCGTGAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                          >  1:2064283‑M2/1‑84 (MQ=255)

                                                  aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttat                                         >  1:654917‑M2/1‑83 (MQ=255)

                                                  aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttat                                         >  1:1893296‑M2/1‑83 (MQ=255)

                                                   tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatc                                         <  1:2121007‑M1/91‑49 (MQ=255)

                                                    gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                       <  1:2386854/91‑1 (MQ=255)

                                                     cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatcta                                       <  1:3026398‑M1/91‑51 (MQ=255)

                                                     cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                      <  1:764873/91‑1 (MQ=255)

                                                     cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                      >  1:3714896/1‑91 (MQ=255)

                                                     cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                      <  1:3958984/91‑1 (MQ=255)

                                                        aaGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctatt                                     <  1:1620954‑M1/91‑53 (MQ=255)

                                                        aaGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctatt                                     <  1:1620853‑M1/91‑53 (MQ=255)

                                                        aaGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattt                                    <  1:3991708‑M1/91‑54 (MQ=255)

                                                        aaGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaa                                   <  1:2932899/91‑1 (MQ=255)

                                                         aGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                  >  1:1524024/1‑91 (MQ=255)

                                                            ataAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAact                               >  1:4071130/1‑91 (MQ=255)

                                                             taAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAacta                              <  1:1809211/91‑1 (MQ=255)

                                                              aaaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                             <  1:28748/91‑1 (MQ=255)

                                                              aaaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                             <  1:2466572/91‑1 (MQ=255)

                                                                  gAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTc                         >  1:1646496/1‑91 (MQ=255)

                                                                   aaaTCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                        <  1:1709598/91‑1 (MQ=255)

                                                                       cAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                    >  1:1646394/1‑91 (MQ=255)

                                                                       cAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                    >  1:3357311/1‑91 (MQ=255)

                                                                        aaaGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa                   <  1:3747222/91‑1 (MQ=255)

                                                                         aagaagAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                  >  1:872830/1‑91 (MQ=255)

                                                                             agaaAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt              >  1:2147768/1‑91 (MQ=255)

                                                                               aaaaTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTc            >  1:2226833/1‑91 (MQ=255)

                                                                                  aTAGAT‑AAACAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac         <  1:2085506‑M2/91‑41 (MQ=255)

                                                                                  aTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac         <  1:120202‑M2/91‑41 (MQ=255)

                                                                                  aTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGGAGAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc         <  1:3320972/91‑1 (MQ=255)

                                                                                    aGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg       <  1:4024087/91‑1 (MQ=255)

                                                                                    aGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg       <  1:4024114/91‑1 (MQ=255)

                                                                                    aGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg       <  1:1465058/91‑1 (MQ=255)

                                                                                      aT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcat      >  1:1893296‑M1/1‑8 (MQ=255)

                                                                                      aT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcat      >  1:654917‑M1/1‑8 (MQ=255)

                                                                                       t‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcatt     >  1:2067735‑M1/1‑7 (MQ=255)

                                                                                       t‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcatt     >  1:1393731‑M1/1‑7 (MQ=255)

                                                                                       t‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc    <  1:1017605/91‑1 (MQ=255)

                                                                                       t‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc    <  1:152817/91‑1 (MQ=255)

                                                                                       t‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCACCTGAAc    <  1:283323/91‑1 (MQ=255)

                                                                                          aaaaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgc   >  1:1306112‑M1/1‑5 (MQ=255)

                                                                                          AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa  >  1:1098584‑M1/1‑91 (MQ=255)

                                                                                          AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa  >  1:4001119‑M1/1‑91 (MQ=255)

                                                                                          AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa  >  1:3503250‑M1/1‑91 (MQ=255)

TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGA  >  USA300TCH1516_ALE/1647485‑1647664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.