| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1647578 | 91 (0.930) | 11 (0.120) | 9/144 | NT | 10.8% | intergenic (+8/+56) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM |
| ? | USA300TCH1516_ALE | = 1647617 | 100 (1.130) | intergenic (+47/+17) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM | |||||
CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1647481‑1647578‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑at‑aaaaaaTGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG < USA300TCH1516_ALE/1647617‑1647528 CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGA > 1:205025/1‑91 TGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT > 1:2416894/1‑91 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCACAGAAGAAAATAGAT‑AAA > 1:3550561/1‑91 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 1:98881/91‑1 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 1:1446636/91‑1 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA > 1:372374/1‑91 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 1:1887798/91‑1 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 1:1888040/91‑1 TTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA < 1:3169088/91‑1 TTTATTATTTCTGCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAA > 1:3186746/1‑91 ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA < 1:404240/91‑1 ACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACGTAGACTATTTTACCTAC < 1:3674859/91‑1 ATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACGTAGACTATTTTACCTACAAGTGC < 1:3260459/91‑1 ATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCT < 1:745831/91‑1 AGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTT < 1:3884162/91‑1 TGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATC < 1:2121007/91‑1 CGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTA < 1:3026398/91‑1 GTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTAT < 1:120202/91‑1 GTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTGTTTATCTAT < 1:2085506/91‑1 AAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATT < 1:1620853/91‑1 AAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATT < 1:1620954/91‑1 AAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTT < 1:3991708/91‑1 AT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCAT > 1:1893296/1‑91 AT‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCAT > 1:654917/1‑91 T‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATT > 1:2067735/1‑91 T‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATT > 1:1393731/1‑91 T‑AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTCACGCATT > 1:2064283/1‑91 AAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGC > 1:453108/1‑91 AAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGC > 1:1306112/1‑91 AAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCT < 1:3312605/91‑1 AAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTT < 1:1904350/91‑1 AAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTT < 1:1904349/91‑1 AAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTT < 1:46527/91‑1 AATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTT < 1:2065231/91‑1 AATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTT < 1:2065295/91‑1 AATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTT < 1:1423947/91‑1 AATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTT > 1:2107676/1‑91 AATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTT > 1:90748/1‑91 ATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG > 1:371174/1‑91 CTGATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1647481‑1647578‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑at‑aaaaaaTGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATCTATTTTCTTCTTTGATTTCTTTTATACTTACGCATTGCTTTG < USA300TCH1516_ALE/1647617‑1647528 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |