| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1647578 | 91 (0.930) | 11 (0.120) | 9/144 | NT | 10.8% | intergenic (+8/+56) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM |
| ? | USA300TCH1516_ALE | = 1647617 | 100 (1.130) | intergenic (+47/+17) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM | |||||
Only 100 of 168 total aligned reads displayed.
ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATT > USA300TCH1516_ALE/1647488‑1647668 | ttattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑aaaaaaa < 1:1168726/91‑1 (MQ=255) ttattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑aaaaaaa < 1:1173507/91‑1 (MQ=255) aacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaa > 1:2280169‑M1/87‑91 (MQ=255) acagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaaa > 1:3067126‑M1/86‑91 (MQ=255) acagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaaa > 1:1937659‑M1/86‑91 (MQ=255) tcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGaa < 1:590887/91‑1 (MQ=255) tcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGaa < 1:111451/91‑1 (MQ=255) cttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAg > 1:2716985/1‑91 (MQ=255) cTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTg > 1:1322896/1‑91 (MQ=255) cTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTg > 1:136006/1‑91 (MQ=255) ttAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGt > 1:2954370/1‑91 (MQ=255) ttAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGt < 1:2265520/91‑1 (MQ=255) tAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTa < 1:3111666/91‑1 (MQ=255) aaCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAg > 1:2760158/1‑91 (MQ=255) gAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTaa < 1:2455334/91‑1 (MQ=255) aGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTaaaa > 1:2539156/1‑91 (MQ=255) gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAAt > 1:4113752/1‑91 (MQ=255) gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAAt > 1:4113301/1‑91 (MQ=255) gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAAt < 1:1242896/91‑1 (MQ=255) ccAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAg > 1:4038437/1‑91 (MQ=255) ccAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAg < 1:4016032/91‑1 (MQ=255) agaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagattAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTc > 1:1334888‑M1/60‑91 (MQ=255) agaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTc > 1:1278706‑M1/60‑91 (MQ=255) aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCt > 1:3089904/1‑91 (MQ=255) gCAAATATCGCAAAGCAATGCGTAAGTATACAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTAc > 1:1653388/1‑91 (MQ=255) gCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTAc > 1:453814/1‑91 (MQ=255) gCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTAc > 1:4043421/1‑91 (MQ=255) atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAcggaagcacgtagactattttacctacaagtgc < 1:3260459‑M1/91‑34 (MQ=255) atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgct < 1:745831‑M1/91‑35 (MQ=255) atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGc < 1:3234437/91‑1 (MQ=255) tatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCt < 1:3653644/91‑1 (MQ=255) atCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCtt < 1:183999/91‑1 (MQ=255) tCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc < 1:3838105/91‑1 (MQ=255) cGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTcc < 1:2699207/91‑1 (MQ=255) gCAAAGCTATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa < 1:2070302/91‑1 (MQ=255) gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa < 1:236809/91‑1 (MQ=255) aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa > 1:2887932‑M1/48‑91 (MQ=255) aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt < 1:2065295‑M2/91‑3 (MQ=255) aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt < 1:2065231‑M2/91‑3 (MQ=255) aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt < 1:1423947‑M2/91‑3 (MQ=255) aatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt > 1:2875549‑M1/46‑91 (MQ=255) aaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt < 1:1904349‑M2/91‑4 (MQ=255) atatcgttcagatgaatggatgtttagaaagttgtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt > 1:3545976‑M1/45‑91 (MQ=255) aGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgttttt < 1:3884162‑M1/91‑44 (MQ=255) tatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt > 1:781905‑M1/44‑91 (MQ=255) atcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt > 1:2111167‑M1/43‑91 (MQ=255) aaTGCGTGAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta > 1:2064283‑M2/1‑84 (MQ=255) aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta > 1:1393731‑M2/1‑84 (MQ=255) aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttat > 1:654917‑M2/1‑83 (MQ=255) tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt > 1:3139322/1‑91 (MQ=255) cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatcta < 1:3026398‑M1/91‑51 (MQ=255) cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt < 1:764873/91‑1 (MQ=255) cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt > 1:3714896/1‑91 (MQ=255) aaGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctatt < 1:1620853‑M1/91‑53 (MQ=255) aaGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattt < 1:3991708‑M1/91‑54 (MQ=255) aaGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaa < 1:3926922/91‑1 (MQ=255) aaGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaa < 1:2932899/91‑1 (MQ=255) aGTATAAAAGAAATCAAAGAAGAAAATAGTT‑GAAAAAA‑CGGAAGCACTTGTAGGTAAGATAGTCTACGTGCTTCCATTTTTTATTCTaaaa < 1:3316790/91‑1 (MQ=255) aGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa > 1:1524320/1‑91 (MQ=255) taAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CCGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAacta < 1:1898878/91‑1 (MQ=255) aaaaGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac < 1:2466572/91‑1 (MQ=255) aGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt < 1:2550508/91‑1 (MQ=255) aGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt > 1:2828592/1‑91 (MQ=255) gAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTc > 1:1646496/1‑91 (MQ=255) aaTCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTa > 1:1503489/1‑91 (MQ=255) cAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc > 1:3357311/1‑91 (MQ=255) aaaGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa < 1:3747222/91‑1 (MQ=255) aagaagAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt > 1:872830/1‑91 (MQ=255) agaaAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt > 1:2147768/1‑91 (MQ=255) aaaaTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTc > 1:2226786/1‑91 (MQ=255) aaaTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatactt < 1:3991708‑M2/91‑39 (MQ=255) aaTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttttatctattttcttctttgatttcttttatactt < 1:1620954‑M2/91‑40 (MQ=255) aaTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttttatctattttcttctttgatttcttttatactt < 1:1620853‑M2/91‑40 (MQ=255) aTAGAT‑AAACAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac < 1:2085506‑M2/91‑41 (MQ=255) aTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac < 1:120202‑M2/91‑41 (MQ=255) aTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCGTTCATc < 1:3013929/91‑1 (MQ=255) aTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc > 1:1762729/1‑91 (MQ=255) aTAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGGAGAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc < 1:3320972/91‑1 (MQ=255) aGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg < 1:1465058/91‑1 (MQ=255) aGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg < 1:4024114/91‑1 (MQ=255) gAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttacgca < 1:2121007‑M2/91‑44 (MQ=255) aT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcat > 1:1893296‑M1/1‑8 (MQ=255) aT‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcat > 1:654917‑M1/1‑8 (MQ=255) aT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGaa < 1:1707939/91‑1 (MQ=255) t‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcatt > 1:2067735‑M1/1‑7 (MQ=255) t‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcatt > 1:1393731‑M1/1‑7 (MQ=255) t‑AAAAAAtggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatactcacgcatt > 1:2064283‑M1/1‑7 (MQ=255) t‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc < 1:1017605/91‑1 (MQ=255) t‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCACCTGAAc < 1:283323/91‑1 (MQ=255) aaaaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgc > 1:1306112‑M1/1‑5 (MQ=255) aaaaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgc > 1:453108‑M1/1‑5 (MQ=255) AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa > 1:1098584‑M1/1‑91 (MQ=255) AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa > 1:3503250‑M1/1‑91 (MQ=255) aaaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgct < 1:3312605‑M1/91‑88 (MQ=255) aaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgctt < 1:46527‑M1/91‑89 (MQ=255) aaatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgctt < 1:1904350‑M1/91‑89 (MQ=255) AAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata < 1:3876924‑M1/91‑1 (MQ=255) aatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgcttt > 1:2107676‑M1/1‑2 (MQ=255) aatggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgcttt > 1:90748‑M1/1‑2 (MQ=255) atggaagcacgtagactattttacctacaagtgcttccgtttttttatctattttcttctttgatttcttttatacttacgcattgctttg > 1:371174‑M1/1‑1 (MQ=255) | ATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGAT‑AAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATT > USA300TCH1516_ALE/1647488‑1647668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |