BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1647578	91 (0.930)	11 (0.120)	9/144	NT	10.8%	intergenic (+8/+56)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM
*	?	USA300TCH1516_ALE	= 1647617	100 (1.130)	11 (0.120)	9/144	NT	10.8%	intergenic (+47/+17)	USA300HOU_RS08180/lipM	hypothetical protein/Octanoyltransferase LipM

Only 100 of 164 total aligned reads displayed.

GCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTG  >  USA300TCH1516_ALE/1647527‑1647707

gCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                                                            <  1:236809/91‑1 (MQ=255)

  aatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                                                                          >  1:2875549‑M1/46‑91 (MQ=255)

  aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                                                                          <  1:2065231‑M2/91‑3 (MQ=255)

  aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                                                                          >  1:2107676‑M2/1‑89 (MQ=255)

  aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                                                                          <  1:1423947‑M2/91‑3 (MQ=255)

   atatcgttcagatgaatggatgtttagaaagttgtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt                                                                                         >  1:3545976‑M1/45‑91 (MQ=255)

   aaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttt                                                                                         <  1:1904349‑M2/91‑4 (MQ=255)

    tatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt                                                                                        >  1:781905‑M1/44‑91 (MQ=255)

     gCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttt                                                                                       >  1:1306112‑M2/1‑86 (MQ=255)

     gCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttt                                                                                       >  1:453108‑M2/1‑86 (MQ=255)

       aaTGCGTGAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                                                                     >  1:2064283‑M2/1‑84 (MQ=255)

       aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                                                                     >  1:1393731‑M2/1‑84 (MQ=255)

       aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttta                                                                                     >  1:2067735‑M2/1‑84 (MQ=255)

        aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttat                                                                                    >  1:1893296‑M2/1‑83 (MQ=255)

         tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                                                                   >  1:3139322/1‑91 (MQ=255)

           cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                 <  1:3958984/91‑1 (MQ=255)

           cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                 <  1:764873/91‑1 (MQ=255)

           cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                 >  1:3714896/1‑91 (MQ=255)

               aGTATAAAAGAAATCAAAGAAGAAAATAGTTGAAAAAACGGAAGCACTTGTAGGTAAGATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                             <  1:3316790/91‑1 (MQ=255)

               aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                             >  1:1524320/1‑91 (MQ=255)

               aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                             <  1:1220339/91‑1 (MQ=255)

                    aaaaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                                                                        <  1:28748/91‑1 (MQ=255)

                    aaaaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                                                                        <  1:2466572/91‑1 (MQ=255)

                       aGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                                                                     >  1:2828592/1‑91 (MQ=255)

                       aGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACttt                                                                     <  1:2550508/91‑1 (MQ=255)

                         aaaTCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                                                                   <  1:1709598/91‑1 (MQ=255)

                         aaaTCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCGACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                                                                   <  1:637630/91‑1 (MQ=255)

                          aaTCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTa                                                                  >  1:1503489/1‑91 (MQ=255)

                             cAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                               >  1:686399/1‑91 (MQ=255)

                             cAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                               >  1:1646394/1‑91 (MQ=255)

                                   agaaAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAt                                                         >  1:2147768/1‑91 (MQ=255)

                                     aaaaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTc                                                       >  1:2226786/1‑91 (MQ=255)

                                       aaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttttatctattttcttctttgatttcttttatactt                                                     <  1:1620853‑M2/91‑40 (MQ=255)

                                        aTAGATAAACAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttac                                                    <  1:2085506‑M2/91‑41 (MQ=255)

                                        aTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCGTTCATc                                                    <  1:3013929/91‑1 (MQ=255)

                                        aTAGATAAAAAAACGGAAGCACTTGTAGGGAGAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc                                                    <  1:3320972/91‑1 (MQ=255)

                                          aGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg                                                  <  1:4024087/91‑1 (MQ=255)

                                          aGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg                                                  <  1:1465058/91‑1 (MQ=255)

                                           gATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttacgca                                                 <  1:2121007‑M2/91‑44 (MQ=255)

                                            aTAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGaa                                                <  1:1707939/91‑1 (MQ=255)

                                            aTAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGaa                                                <  1:1154176/91‑1 (MQ=255)

                                             tAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                               <  1:1017605/91‑1 (MQ=255)

                                               AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                             >  1:1098584‑M1/1‑91 (MQ=255)

                                               AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                             >  1:890999‑M1/1‑91 (MQ=255)

                                               AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                             >  1:4001119‑M1/1‑91 (MQ=255)

                                                aaaaaCGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttacgcattgct                                            <  1:3884162‑M2/91‑49 (MQ=255)

                                                 AAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                           <  1:3876924‑M1/91‑1 (MQ=255)

                                                   AACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTACATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtt                                         <  1:3501629‑M1/91‑1 (MQ=255)

                                                     cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                       >  1:1934207/1‑91 (MQ=255)

                                                     cGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                       >  1:2456005/1‑91 (MQ=255)

                                                        aaGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCa                                    <  1:1859972/91‑1 (MQ=255)

                                                         aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttttatctattttcttctttgatttcttttatacttacgcattgctttgcgatat                                   <  1:745831‑M2/91‑58 (MQ=255)

                                                         aGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                   >  1:19435/1‑91 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCGtttttttatctattttcttctttgatttcttttatacttacgcattgctttgcgatat                                  <  1:3260459‑M2/91‑59 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:3019777/91‑1 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:847246/91‑1 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:1301557/91‑1 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:1741214/91‑1 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:1899835/91‑1 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:2913976/91‑1 (MQ=255)

                                                          gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                  <  1:847831/91‑1 (MQ=255)

                                                             cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                               >  1:3029633/1‑91 (MQ=255)

                                                             cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                               <  1:2319570/91‑1 (MQ=255)

                                                                gTAGGTAAAATAGTCTACGTGCTTCCGtttttttatctattttcttctttgatttcttttatacttacgcattgctttgcgatatttgcgt                            <  1:3674859‑M2/91‑65 (MQ=255)

                                                                 tAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttct                           >  1:238071/1‑91 (MQ=255)

                                                                   ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTTAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                         <  1:3597597/91‑1 (MQ=255)

                                                                   ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTTAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                         <  1:3597598/91‑1 (MQ=255)

                                                                   ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                         >  1:1914954/1‑91 (MQ=255)

                                                                   ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                         >  1:495566/1‑91 (MQ=255)

                                                                       aaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACt                     >  1:992659/1‑91 (MQ=255)

                                                                       aaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACt                     <  1:106842/91‑1 (MQ=255)

                                                                        aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                    <  1:957109/91‑1 (MQ=255)

                                                                         aTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTc                   <  1:596887/91‑1 (MQ=255)

                                                                          tAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCt                  <  1:563601/91‑1 (MQ=255)

                                                                           aGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTg                 <  1:192008/91‑1 (MQ=255)

                                                                             tCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGcc               >  1:122146/1‑91 (MQ=255)

                                                                              cTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCa              >  1:161262/1‑91 (MQ=255)

                                                                              cTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCa              >  1:2344949/1‑91 (MQ=255)

                                                                               tACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCaa             >  1:1336582/1‑91 (MQ=255)

                                                                                aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt            >  1:3805979/1‑91 (MQ=255)

                                                                                aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt            <  1:4067824/91‑1 (MQ=255)

                                                                                 cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCCGTTAATTCTTCCACTTCTGCCAAtt           >  1:3848737/1‑91 (MQ=255)

                                                                                  gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          <  1:1026313/91‑1 (MQ=255)

                                                                                  gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          >  1:4042115/1‑91 (MQ=255)

                                                                                  gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          <  1:1279419/91‑1 (MQ=255)

                                                                                  gTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTg          <  1:1824129/91‑1 (MQ=255)

                                                                                    gCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAg        <  1:968350/91‑1 (MQ=255)

                                                                                     cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc       >  1:3700236/1‑91 (MQ=255)

                                                                                     cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc       <  1:3373876/91‑1 (MQ=255)

                                                                                     cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc       <  1:3701884/91‑1 (MQ=255)

                                                                                      ttCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCt      <  1:3180/91‑1 (MQ=255)

                                                                                      ttCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCt      <  1:4051997/91‑1 (MQ=255)

                                                                                       tCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCtt     >  1:2646310/1‑91 (MQ=255)

                                                                                        ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc    >  1:3238420/1‑91 (MQ=255)

                                                                                        ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc    <  1:231981/91‑1 (MQ=255)

                                                                                        ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc    <  1:231935/91‑1 (MQ=255)

                                                                                         cATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCt   >  1:3476776/1‑91 (MQ=255)

                                                                                         cATTTTTTATTCCAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCctct   >  1:3208565/1‑91 (MQ=255)

                                                                                          aTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg  >  1:1778354/1‑91 (MQ=255)

                                                                                          aTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg  >  1:1776011/1‑91 (MQ=255)

GCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTG  >  USA300TCH1516_ALE/1647527‑1647707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.