| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1665362 | 67 (0.680) | 17 (0.260) | 10/108 | NT | 24.4% | intergenic (‑237/+40) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665378 | 60 (0.900) | intergenic (‑253/+24) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein | |||||
CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1665247‑1665362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatataaagaaatgagatttatgcaCATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA < USA300TCH1516_ALE/1665378‑1665289 CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTAT > 1:2663737/1‑91CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTAT > 1:2663339/1‑91 AAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAA > 1:3544627/1‑91 AAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAAT > 1:4047079/1‑91 ATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATAT < 1:2833994/91‑1 AATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAA < 1:2662396/91‑1 AATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAA > 1:913340/1‑91 AATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAA > 1:2372572/1‑91 TTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACTTGTATCTTCTATAATATCAAG > 1:2137105/1‑91 TTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAG > 1:2137088/1‑91 AAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGGGTATGAAATGAACCTTTATCTTCTATAATATAAAGAA < 1:3506599/91‑1 AAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAA > 1:1897339/1‑91 AAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAA > 1:1305253/1‑91 ACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT < 1:3367490/91‑1 ACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAAT < 1:3151281/91‑1 CATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATG < 1:4112826/91‑1 ATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGA > 1:3782555/1‑91 ATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGA > 1:3782338/1‑91 TTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAT < 1:998890/91‑1 TTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAT > 1:2280570/1‑91 TTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGAT > 1:859602/1‑91 TGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATT < 1:798174/91‑1 TGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATT < 1:1070481/91‑1 TGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATT < 1:1333345/91‑1 TGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATT < 1:1260417/91‑1 GTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTT > 1:421021/1‑91 GTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTT > 1:1195235/1‑91 GTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTT > 1:2830941/1‑91 ATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTAT > 1:3049652/1‑91 ATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTAT > 1:3049623/1‑91 TATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATG < 1:3998611/91‑1 ATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGC > 1:2605362/1‑91 ATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGC > 1:2609983/1‑91 TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCA < 1:2024279/91‑1 TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTGCTATAATATAAAGAAATGAGATTTATGCA > 1:3323881/1‑91 AAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACAT < 1:1002549/91‑1 TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTA < 1:1225778/91‑1 TGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTAT < 1:3080615/91‑1 CATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCA < 1:3554375/91‑1 ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT < 1:3102314/91‑1 ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT < 1:4067347/91‑1 ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT < 1:1397711/91‑1 ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT < 1:303281/91‑1 ATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCAT < 1:303463/91‑1 AAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAA < 1:3073585/91‑1 AAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAA < 1:1011843/91‑1 AAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAA < 1:1012300/91‑1 AATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAAT < 1:2132835/91‑1 ATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATC < 1:2784105/91‑1 TCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCT < 1:2243965/91‑1 ATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCA < 1:2099348/91‑1 TACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCAT < 1:480742/91‑1 TACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCAT < 1:480725/91‑1 TAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT < 1:1454574/91‑1 TAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT < 1:1454905/91‑1 TAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT < 1:97455/91‑1 TAATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCAT < 1:1454690/91‑1 AATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATA > 1:2327310/1‑91 ATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATAC > 1:2186033/1‑91 ATATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATAC < 1:2765058/91‑1 TATAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACT > 1:3589088/1‑91 TAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACgaa < 1:811725/91‑4 TAAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACgaa < 1:811657/91‑4 AAAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCG < 1:741957/91‑1 AAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGT < 1:3363557/91‑1 AAGAAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGT < 1:2035796/91‑1 AAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTGATACTCCGTTCG < 1:3207382/91‑1 AAATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCG < 1:894605/91‑1 AATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGT < 1:1533194/91‑1 AATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGT < 1:406212/91‑1 ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA > 1:2723265/1‑91 ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA > 1:3260036/1‑91 ATGAGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTA > 1:3259931/1‑91 aGAGATTTATGCACATGTGGTCAGATGGATGCATAAATCTCATGTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTAT < 1:1130054/90‑1 AGATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGA > 1:2700066/1‑91 GATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGAT > 1:3591099/1‑91 GATTTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGAT > 1:548949/1‑91 TTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTT < 1:2724828/91‑1 TTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTT < 1:2946504/91‑1 TTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTT > 1:1946697/1‑91 TTATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTT < 1:3251824/91‑1 TATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTA < 1:1639436/91‑1 TATGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTA < 1:1639820/91‑1 TGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATG > 1:1223722/1‑91 TGCACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATG > 1:3510657/1‑91 ACATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA > 1:3789865/1‑91 CAAAAATAATTAAACATTTTGTATATAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1665247‑1665362‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatataaagaaatgagatttatgcaCATTTGGTCAGATGTATGCATAAATCTCATTTCTTTATATTATAGAAGATAAAGGTTCATTTCATACTCCGTTCGTATGATTTTATGGCA < USA300TCH1516_ALE/1665378‑1665289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |