| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1665362 | 67 (0.680) | 17 (0.260) | 10/108 | NT | 24.4% | intergenic (‑237/+40) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665378 | 60 (0.900) | intergenic (‑253/+24) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 125 total aligned reads displayed.
TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGT > USA300TCH1516_ALE/1665288‑1665468 | ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg > 1:1369718/1‑91 (MQ=255)ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg > 1:1372826/1‑91 (MQ=255) cATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgca > 1:3510657‑M2/1‑87 (MQ=255) cATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgca > 1:1223722‑M2/1‑87 (MQ=255) tAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcata < 1:1639820‑M2/91‑7 (MQ=255) tAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcata < 1:1639436‑M2/91‑7 (MQ=255) aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa > 1:1946697‑M2/1‑84 (MQ=255) aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa < 1:2724828‑M2/91‑8 (MQ=255) aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa < 1:2946504‑M2/91‑8 (MQ=255) aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa < 1:3251824‑M2/91‑8 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 1:548949‑M2/1‑81 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 1:3591099‑M2/1‑81 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct > 1:2700066‑M2/1‑80 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat > 1:3260036‑M2/1‑77 (MQ=255) aCGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt < 1:1533194‑M2/91‑16 (MQ=255) aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt < 1:2035796‑M2/91‑20 (MQ=255) aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt < 1:3363557‑M2/91‑20 (MQ=255) ttcgtatGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttcttta < 1:811725‑M2/88‑22 (MQ=255) ttcgtatGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttcttta < 1:811657‑M2/88‑22 (MQ=255) aGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttata > 1:3589088‑M2/1‑68 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat < 1:2765058‑M2/91‑25 (MQ=255) tATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatt > 1:2327310‑M2/1‑66 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatta < 1:1454574‑M2/91‑27 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatta < 1:1454905‑M2/91‑27 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatta < 1:1454690‑M2/91‑27 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa > 1:1537245/1‑91 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa > 1:1533999/1‑91 (MQ=255) aaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATc < 1:81408/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 1:675110/91‑1 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 1:1720255/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:2726806/91‑1 (MQ=255) gaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTgg < 1:3259533/91‑1 (MQ=255) gaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTgg < 1:941110/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc < 1:2645101/91‑1 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa > 1:3520248/1‑91 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa < 1:15361/91‑1 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa < 1:15426/91‑1 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa < 1:15972/91‑1 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa < 1:1188347/91‑1 (MQ=255) ttATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGAc > 1:4044619/1‑91 (MQ=255) ttATCTTCTATAATATAAAGAAATGAGATTTAGGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATACTAATCTTGGCAAGAc < 1:3537532/91‑1 (MQ=255) tcttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca < 1:1356437/91‑1 (MQ=255) tctgctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca < 1:3215959/87‑1 (MQ=255) tctcctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca < 1:3217026/91‑1 (MQ=255) cttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTcac < 1:1727581/91‑1 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa < 1:1920963/91‑1 (MQ=255) ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa > 1:1600848/1‑91 (MQ=255) taatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac > 1:1854770/1‑91 (MQ=255) taatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac < 1:672086/91‑1 (MQ=255) taatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac < 1:672244/91‑1 (MQ=255) tataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt < 1:2690515/91‑1 (MQ=255) tataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt < 1:2690424/91‑1 (MQ=255) ataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATa > 1:3033036/1‑91 (MQ=255) aaGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 1:2767140/91‑1 (MQ=255) aaGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 1:542549/91‑1 (MQ=255) gAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 1:2214146/1‑91 (MQ=255) gAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 1:2213732/1‑91 (MQ=255) aaTGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACttga < 1:1552724/91‑3 (MQ=255) aTGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta < 1:480725‑M2/91‑62 (MQ=255) aTGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta < 1:480742‑M2/91‑62 (MQ=255) aTGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCaa > 1:3391903/1‑91 (MQ=255) tGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtat < 1:2099348‑M2/91‑63 (MQ=255) tGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg < 1:3181/91‑1 (MQ=255) tGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg < 1:3780720/91‑1 (MQ=255) agaTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatga < 1:2243965‑M2/91‑65 (MQ=255) agaTTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTCATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 1:3286337/1‑91 (MQ=255) gaTTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt > 1:4067798/1‑91 (MQ=255) aTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatt < 1:2132835‑M2/91‑67 (MQ=255) aTTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttg > 1:1230289/1‑91 (MQ=255) ttATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttt < 1:1011843‑M2/91‑69 (MQ=255) ttATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttt < 1:1012300‑M2/91‑69 (MQ=255) ttATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttt < 1:3073585‑M2/91‑69 (MQ=255) tATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgt < 1:967079/91‑1 (MQ=255) aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 1:3102314‑M2/91‑71 (MQ=255) aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 1:4067347‑M2/91‑71 (MQ=255) aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat < 1:303281‑M2/91‑71 (MQ=255) tGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt < 1:2605921/91‑1 (MQ=255) gCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg < 1:907659/91‑1 (MQ=255) gCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg > 1:2022942/1‑91 (MQ=255) aTACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggca < 1:3080615‑M2/91‑75 (MQ=255) aTACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 1:941606/91‑1 (MQ=255) aTACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 1:1198173/91‑1 (MQ=255) aTACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 1:371947/91‑1 (MQ=255) tACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggcaa < 1:1225778‑M2/91‑76 (MQ=255) aCATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGaa < 1:2576280/91‑1 (MQ=255) aCATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGaa < 1:2575847/91‑1 (MQ=255) aCATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGaa > 1:870866/1‑91 (MQ=255) cTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATAtt < 1:1898050/91‑1 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:4151350/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:1058579/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACGCACATACACCATAAACTTCAAGTTTGTGTATGTGAATATTaaa > 1:4151202/1‑90 (MQ=255) cAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAacac > 1:652910/1‑91 (MQ=255) aaaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACAcc < 1:1398241/91‑1 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCa > 1:2832503/1‑91 (MQ=255) aTGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggcaaatctgttaacttt < 1:1002549‑M2/91‑89 (MQ=255) aTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAg > 1:3996242/1‑91 (MQ=255) aTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAg > 1:3996241/1‑91 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt < 1:3458067/91‑1 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt < 1:2409198/91‑1 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt > 1:385800/1‑91 (MQ=255) | TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGT > USA300TCH1516_ALE/1665288‑1665468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |