BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1665362	67 (0.680)	17 (0.260)	10/108	NT	24.4%	intergenic (‑237/+40)	sodA/zur	Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein
*	?	USA300TCH1516_ALE	= 1665378	60 (0.900)	17 (0.260)	10/108	NT	24.4%	intergenic (‑253/+24)	sodA/zur	Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein

Only 100 of 178 total aligned reads displayed.

TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTG  >  USA300TCH1516_ALE/1665272‑1665452

taAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTGCTATAATATAAAGAAATGAGATTTATGCA                                                                                            >  1:3323881‑M1/1‑91 (MQ=255)

  aaaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATa                                                                                          >  1:3123921/1‑91 (MQ=255)

   aaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcat                                                                                         <  1:1002549‑M1/91‑4 (MQ=255)

        tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg                                                                                    <  1:2643826/91‑1 (MQ=255)

         aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa                                                                                   >  1:1755110/1‑91 (MQ=255)

         aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa                                                                                   >  1:2605941/1‑91 (MQ=255)

         aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa                                                                                   <  1:739320/91‑1 (MQ=255)

           cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAcc                                                                                 >  1:1041443/1‑91 (MQ=255)

           cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAcc                                                                                 <  1:2480841/91‑1 (MQ=255)

            aGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCa                                                                                <  1:3836706/91‑1 (MQ=255)

                ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgta                                                                            <  1:1225778‑M1/91‑17 (MQ=255)

                ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg                                                                            >  1:1372826/1‑91 (MQ=255)

                ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg                                                                            >  1:1369718/1‑91 (MQ=255)

                 tGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtat                                                                           <  1:3080615‑M1/91‑18 (MQ=255)

                    cATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgca                                                                        >  1:3510657‑M2/1‑87 (MQ=255)

                     aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat                                                                       <  1:303281‑M1/91‑22 (MQ=255)

                     aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat                                                                       <  1:303463‑M1/91‑22 (MQ=255)

                     aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcat                                                                       <  1:3102314‑M1/91‑22 (MQ=255)

                      tAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcata                                                                      <  1:1639436‑M2/91‑7 (MQ=255)

                       aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataa                                                                     <  1:1011843‑M1/91‑24 (MQ=255)

                       aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataa                                                                     <  1:3073585‑M1/91‑24 (MQ=255)

                       aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataa                                                                     <  1:1012300‑M1/91‑24 (MQ=255)

                       aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa                                                                     <  1:2724828‑M2/91‑8 (MQ=255)

                       aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa                                                                     <  1:3251824‑M2/91‑8 (MQ=255)

                       aaaaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataa                                                                     >  1:1946697‑M2/1‑84 (MQ=255)

                         aaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaat                                                                   <  1:2132835‑M1/91‑26 (MQ=255)

                          aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatc                                                                  <  1:2784105‑M1/91‑27 (MQ=255)

                          aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc                                                                  >  1:3591099‑M2/1‑81 (MQ=255)

                           tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct                                                                 >  1:2700066‑M2/1‑80 (MQ=255)

                             aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGACATGAGATTTATGCATCCATCTGACCACATGtgcataaatctct                                                               <  1:1130054‑M2/91‑14 (MQ=255)

                             aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctca                                                               <  1:2099348‑M1/91‑30 (MQ=255)

                              tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcat                                                              <  1:480742‑M1/91‑31 (MQ=255)

                              tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcat                                                              <  1:480725‑M1/91‑31 (MQ=255)

                              tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat                                                              >  1:2723265‑M2/1‑77 (MQ=255)

                               aCGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt                                                             <  1:406212‑M2/91‑16 (MQ=255)

                               aCGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatt                                                             <  1:1533194‑M2/91‑16 (MQ=255)

                                   aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt                                                         <  1:2035796‑M2/91‑20 (MQ=255)

                                   aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt                                                         <  1:3363557‑M2/91‑20 (MQ=255)

                                    cGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttcttt                                                        <  1:741957‑M2/91‑21 (MQ=255)

                                       aGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttata                                                     >  1:3589088‑M2/1‑68 (MQ=255)

                                        gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat                                                    <  1:2765058‑M2/91‑25 (MQ=255)

                                          atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatta                                                  <  1:1454690‑M2/91‑27 (MQ=255)

                                          atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatta                                                  <  1:1454574‑M2/91‑27 (MQ=255)

                                             aaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATc                                               <  1:81408/91‑1 (MQ=255)

                                              aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt                                              <  1:1720255/91‑1 (MQ=255)

                                              aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt                                              <  1:675110/91‑1 (MQ=255)

                                                tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg                                            <  1:2368249/91‑1 (MQ=255)

                                                  aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc                                          <  1:3442108/91‑1 (MQ=255)

                                                   aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa                                         <  1:15972/91‑1 (MQ=255)

                                                   aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa                                         <  1:15361/91‑1 (MQ=255)

                                                   aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa                                         <  1:15395/91‑1 (MQ=255)

                                                   aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa                                         <  1:15426/91‑1 (MQ=255)

                                                    ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa                                        <  1:1188347/91‑1 (MQ=255)

                                                       ttATCTTCTATAATATAAAGAAATGAGATTTAGGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATACTAATCTTGGCAAGAc                                     <  1:3537532/91‑1 (MQ=255)

                                                          tcttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca                                  <  1:1469470/91‑1 (MQ=255)

                                                          tcttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca                                  >  1:424450/1‑91 (MQ=255)

                                                          tctgctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca                                  <  1:3215959/87‑1 (MQ=255)

                                                          tctcctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTca                                  <  1:3217026/91‑1 (MQ=255)

                                                           cttctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTcac                                 <  1:1727581/91‑1 (MQ=255)

                                                              ctATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATa                              <  1:1920963/91‑1 (MQ=255)

                                                                 taatataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcat                           <  1:97455‑M1/91‑66 (MQ=255)

                                                                 taatataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcat                           <  1:1454905‑M1/91‑66 (MQ=255)

                                                                 taatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac                           <  1:672086/91‑1 (MQ=255)

                                                                 taatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATacac                           >  1:1854770/1‑91 (MQ=255)

                                                                  aatataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcata                          >  1:2327310‑M1/1‑25 (MQ=255)

                                                                   atataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatac                         <  1:2765058‑M1/91‑68 (MQ=255)

                                                                   atataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatac                         >  1:2186033‑M1/1‑24 (MQ=255)

                                                                    tataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt                        <  1:2690515/91‑1 (MQ=255)

                                                                    tataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt                        <  1:2690424/91‑1 (MQ=255)

                                                                      taaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatacgaa                      <  1:811725‑M1/91‑71 (MQ=255)

                                                                      taaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatacgaa                      <  1:811657‑M1/91‑71 (MQ=255)

                                                                        aaGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgt                    <  1:2035796‑M1/91‑73 (MQ=255)

                                                                          gAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt                  >  1:2213732/1‑91 (MQ=255)

                                                                          gAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt                  >  1:2214146/1‑91 (MQ=255)

                                                                           aaaTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttgatactccgttcg                 <  1:3207382‑M1/91‑76 (MQ=255)

                                                                           aaaTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcg                 <  1:894605‑M1/91‑76 (MQ=255)

                                                                            aaTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgt                <  1:406212‑M1/91‑77 (MQ=255)

                                                                             aTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta               >  1:3259931‑M1/1‑14 (MQ=255)

                                                                             aTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta               >  1:3260036‑M1/1‑14 (MQ=255)

                                                                             aTGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta               <  1:480742‑M2/91‑62 (MQ=255)

                                                                                agaTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatga            <  1:2243965‑M2/91‑65 (MQ=255)

                                                                                agaTTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt            >  1:2633287/1‑91 (MQ=255)

                                                                                agaTTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTCATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt            >  1:3286337/1‑91 (MQ=255)

                                                                                 gaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgat           >  1:548949‑M1/1‑10 (MQ=255)

                                                                                  aTTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttg          >  1:1230289/1‑91 (MQ=255)

                                                                                    ttATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttt        <  1:2946504‑M1/91‑85 (MQ=255)

                                                                                     tATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgatttta       <  1:1639820‑M1/91‑86 (MQ=255)

                                                                                      aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat      <  1:4067347‑M2/91‑71 (MQ=255)

                                                                                      aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat      <  1:3102314‑M2/91‑71 (MQ=255)

                                                                                      aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat      <  1:303281‑M2/91‑71 (MQ=255)

                                                                                      aTGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttat      <  1:1397711‑M2/91‑71 (MQ=255)

                                                                                       tGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatg     >  1:1223722‑M1/1‑4 (MQ=255)

                                                                                       tGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatg     >  1:3510657‑M1/1‑4 (MQ=255)

                                                                                       tGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatg     <  1:3554375‑M2/91‑72 (MQ=255)

                                                                                       tGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt     <  1:1624269/91‑1 (MQ=255)

                                                                                        gCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg    <  1:907659/91‑1 (MQ=255)

                                                                                        gCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttg    >  1:2022942/1‑91 (MQ=255)

                                                                                          acatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggca  >  1:3789865‑M1/1‑1 (MQ=255)

                                                                                          aTACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg  <  1:371947/91‑1 (MQ=255)

                                                                                          aTACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg  <  1:941606/91‑1 (MQ=255)

TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTG  >  USA300TCH1516_ALE/1665272‑1665452

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.