| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1676788 | 102 (1.040) | 7 (0.070) | 6/156 | NT | 7.1% | intergenic (‑344/‑75) | ccpN/glyQS | Transcriptional repressor CcpN/Glycine‑‑tRNA ligase |
| ? | USA300TCH1516_ALE | = 1676835 | 85 (0.890) | intergenic (‑391/‑28) | ccpN/glyQS | Transcriptional repressor CcpN/Glycine‑‑tRNA ligase | |||||
AATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1676697‑1676788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTACG < USA300TCH1516_ALE/1676835‑1676746 AATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTC < 1:1149550/91‑1AATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTC < 1:2541469/91‑1AATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTC < 1:2729252/91‑1 CGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAAATAACAGCATAGTAAATATGCTTT < 1:2768294/91‑1 GCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAAATAACAGCATAGTAAATATGCTTTA < 1:2652916/91‑1 CGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTAC < 1:1961987/91‑1 CGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTAC < 1:3461141/91‑1 TAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCA < 1:3779562/91‑1 AAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCAT < 1:1875844/91‑1 ATTTTGTATTATATACAATTTAAAATATTAACTCGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAAT < 1:934705/91‑1 CGCCCCATGTAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTAC > 1:2087540/1‑91 CGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTAC < 1:1990626/91‑1 CGCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTAC < 1:1991087/91‑1 GCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTACG > 1:683546/1‑91 AATAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1676697‑1676788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgCCCCATGGAAAATAACAGCATAGTAAATATGCTTTACTTCCATGGGACGAGTTAATATTTTAAATTGTATATAATACAAAATAAGTTACG < USA300TCH1516_ALE/1676835‑1676746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |