BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1676788	102 (1.040)	7 (0.070)	6/156	NT	7.1%	intergenic (‑344/‑75)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1676835	85 (0.890)	7 (0.070)	6/156	NT	7.1%	intergenic (‑391/‑28)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase

Only 100 of 129 total aligned reads displayed.

TAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGG  >  USA300TCH1516_ALE/1676699‑1676878

taaaaGCGAGTGACTACACTAATTTGGGTCGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                           <  1:2309218/91‑1 (MQ=255)

  aaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTcc                                                                                         >  1:3249196/1‑91 (MQ=255)

  aaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTcc                                                                                         <  1:1194214/91‑1 (MQ=255)

  aaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGATTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTcc                                                                                         >  1:3499601/1‑91 (MQ=255)

  aaaGCGAGTCACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTcc                                                                                         >  1:2082943/1‑91 (MQ=255)

   aaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTccc                                                                                        <  1:1846502/91‑1 (MQ=255)

   aaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTccc                                                                                        <  1:1846468/91‑1 (MQ=255)

    aGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCa                                                                                       >  1:2793997/1‑91 (MQ=255)

    aGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCa                                                                                       <  1:2548196/91‑1 (MQ=255)

     gCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCAt                                                                                      <  1:726928/91‑1 (MQ=255)

      cGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATg                                                                                     >  1:1381476/1‑91 (MQ=255)

        aGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGa                                                                                   >  1:1100301/1‑91 (MQ=255)

         gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGaa                                                                                  >  1:3716524/1‑91 (MQ=255)

         gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGaa                                                                                  >  1:2954701/1‑91 (MQ=255)

         gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGaa                                                                                  <  1:1504496/91‑1 (MQ=255)

              tACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTaaa                                                                             <  1:2275510/91‑1 (MQ=255)

              tACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTaaa                                                                             <  1:2004811/91‑1 (MQ=255)

              tACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTaaa                                                                             <  1:2003939/91‑1 (MQ=255)

              tACACTAATTTGGGTGGAACCGCGGATTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTaaa                                                                             <  1:3853622/91‑1 (MQ=255)

                 acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCa                                                                          <  1:3959432/91‑1 (MQ=255)

                 acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCa                                                                          <  1:537603/91‑1 (MQ=255)

                 acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCa                                                                          <  1:538254/91‑1 (MQ=255)

                 acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCa                                                                          <  1:978954/91‑1 (MQ=255)

                   tAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCata                                                                        <  1:2826754/91‑1 (MQ=255)

                     aTTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAtt                                                                      <  1:677697/91‑1 (MQ=255)

                     aTTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAtt                                                                      <  1:1036760/91‑1 (MQ=255)

                     aTTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAtt                                                                      <  1:1038537/91‑1 (MQ=255)

                      tttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAttt                                                                     <  1:1744968/91‑1 (MQ=255)

                      tttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGGCCCATGGAAGTAAAGCATAttt                                                                     <  1:1744648/91‑1 (MQ=255)

                        tGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTAc                                                                   <  1:2876276/91‑1 (MQ=255)

                        tGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTAc                                                                   <  1:397967/91‑1 (MQ=255)

                         gggAGGAACTGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACt                                                                  <  1:3725893/91‑1 (MQ=255)

                          ggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTGCTa                                                                 >  1:3345693/1‑91 (MQ=255)

                          ggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTa                                                                 >  1:367466/1‑91 (MQ=255)

                          ggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTa                                                                 >  1:1343297/1‑91 (MQ=255)

                           gTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTAt                                                                <  1:4126305/91‑1 (MQ=255)

                           gTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTAt                                                                <  1:4082517/91‑1 (MQ=255)

                            tGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATg                                                               >  1:2053875/1‑91 (MQ=255)

                             ggAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGc                                                              <  1:397311/91‑1 (MQ=255)

                             ggAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGc                                                              <  1:397277/91‑1 (MQ=255)

                              gAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCt                                                             <  1:3082003/91‑1 (MQ=255)

                               aaCCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTg                                                            >  1:4025952/1‑91 (MQ=255)

                                 ccGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGtt                                                          <  1:32551/91‑1 (MQ=255)

                                  cgcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgcttt                                                         <  1:2768294‑M1/91‑36 (MQ=255)

                                  cgcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTa                                                         >  1:1047773/1‑91 (MQ=255)

                                   gcgTGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATACTTACTATGCTGTTAt                                                        <  1:3215315/91‑1 (MQ=255)

                                   gcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgcttta                                                        <  1:2652916‑M1/91‑37 (MQ=255)

                                    cgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttac                                                       <  1:3461141‑M1/91‑38 (MQ=255)

                                    cgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttac                                                       <  1:1961987‑M1/91‑38 (MQ=255)

                                     gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAttt                                                      <  1:738126/91‑1 (MQ=255)

                                       gTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTc                                                    >  1:380527/1‑91 (MQ=255)

                                       gTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTc                                                    >  1:389378/1‑91 (MQ=255)

                                         tAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttcca                                                  <  1:3779562‑M1/91‑43 (MQ=255)

                                          aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccat                                                 <  1:1875844‑M1/91‑44 (MQ=255)

                                           aaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATg                                                <  1:2055759/91‑1 (MQ=255)

                                            aTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgg                                               <  1:1495917/91‑1 (MQ=255)

                                            aTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgg                                               <  1:843697/91‑1 (MQ=255)

                                             tACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATggg                                              <  1:919028/91‑1 (MQ=255)

                                              aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                             <  1:3608781/91‑1 (MQ=255)

                                               cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                            >  1:683546‑M2/1‑90 (MQ=255)

                                                gTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcg                                           <  1:1990626‑M2/91‑3 (MQ=255)

                                                gTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcg                                           <  1:1991087‑M2/91‑3 (MQ=255)

                                                gTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTACATGGGGcg                                           >  1:2087540‑M2/1‑89 (MQ=255)

                                                 tAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGt                                          >  1:569222/1‑91 (MQ=255)

                                                  aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                         >  1:2799201/1‑91 (MQ=255)

                                                    cTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                       >  1:2407378/1‑91 (MQ=255)

                                                     ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                      <  1:3902314/91‑1 (MQ=255)

                                                     ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                      <  1:3902657/91‑1 (MQ=255)

                                                     ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                      <  1:122733/91‑1 (MQ=255)

                                                      tATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCa                                     <  1:1189661/91‑1 (MQ=255)

                                                      tATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCa                                     <  1:1189173/91‑1 (MQ=255)

                                                       aTTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaat                                    <  1:934705‑M1/91‑57 (MQ=255)

                                                       aTTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                    >  1:3041178/1‑91 (MQ=255)

                                                       aTTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                    <  1:744763/91‑1 (MQ=255)

                                                        ttttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATg                                   <  1:1108709/91‑1 (MQ=255)

                                                        ttttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATg                                   <  1:2455976/91‑1 (MQ=255)

                                                          ttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTa                                 <  1:4033212/91‑1 (MQ=255)

                                                            gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                               >  1:1541860/1‑91 (MQ=255)

                                                            gTATTATATACAACTTAAAATATTAACTCGTCCCATGGAAGTAGAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                               <  1:4151557/91‑1 (MQ=255)

                                                             tattatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATga                              >  1:2891900/1‑91 (MQ=255)

                                                             tattatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATga                              <  1:2736557/91‑1 (MQ=255)

                                                              attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgag                             >  1:1931638/1‑91 (MQ=255)

                                                               ttatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgagg                            <  1:1411100/91‑1 (MQ=255)

                                                                 atataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgaggag                          >  1:2639406/1‑91 (MQ=255)

                                                                    taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                       <  1:4118279/91‑1 (MQ=255)

                                                                     aCAACTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGTGCGTTTTCATGTATGAGGAGAGGt                      <  1:2036287/91‑1 (MQ=255)

                                                                        aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                   <  1:1101292/91‑1 (MQ=255)

                                                                        aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                   >  1:2049806/1‑91 (MQ=255)

                                                                          ttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTa                 <  1:3756460/91‑1 (MQ=255)

                                                                          ttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTa                 <  1:721114/91‑1 (MQ=255)

                                                                             aaaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATgg              <  1:87809/91‑1 (MQ=255)

                                                                              aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc             <  1:131694/91‑1 (MQ=255)

                                                                               atatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCa            >  1:1012184/1‑91 (MQ=255)

                                                                                 atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaat          <  1:934705‑M2/91‑36 (MQ=255)

                                                                                 atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaa          >  1:1683371/1‑91 (MQ=255)

                                                                                  ttAACTCGTCCCATGGAAGTAAAGCATATTTACGATGCTGTTATTTACCATGGGGCGTTCTGATGTATGAGGAGAGGTAATTATGGCaaaa         >  1:3317183/1‑91 (MQ=255)

                                                                                    aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa       <  1:532467/91‑1 (MQ=255)

                                                                                        cGccccatgtaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttac   >  1:2087540‑M1/1‑2 (MQ=255)

                                                                                        cGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttac   <  1:1990626‑M1/91‑90 (MQ=255)

                                                                                         gccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttacg  >  1:683546‑M1/1‑1 (MQ=255)

TAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGG  >  USA300TCH1516_ALE/1676699‑1676878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.