BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1676788	102 (1.040)	7 (0.070)	6/156	NT	7.1%	intergenic (‑344/‑75)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1676835	85 (0.890)	7 (0.070)	6/156	NT	7.1%	intergenic (‑391/‑28)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase

Only 100 of 110 total aligned reads displayed.

ACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGT  >  USA300TCH1516_ALE/1676745‑1676925

aCGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgggg                                                                                            <  1:3608781/91‑1 (MQ=255)

 cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                                                                           >  1:683546‑M2/1‑90 (MQ=255)

  gTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcg                                                                                          <  1:1990626‑M2/91‑3 (MQ=255)

  gTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcg                                                                                          <  1:1991087‑M2/91‑3 (MQ=255)

  gTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTACATGGGGcg                                                                                          >  1:2087540‑M2/1‑89 (MQ=255)

   tAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGt                                                                                         >  1:569222/1‑91 (MQ=255)

    aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                                                                        >  1:2799201/1‑91 (MQ=255)

      cTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                                                                      >  1:2407378/1‑91 (MQ=255)

       ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     <  1:3902657/91‑1 (MQ=255)

       ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     <  1:3902314/91‑1 (MQ=255)

       ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     <  1:122733/91‑1 (MQ=255)

        tATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCa                                                                                    <  1:1189661/91‑1 (MQ=255)

        tATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCa                                                                                    <  1:1189173/91‑1 (MQ=255)

         aTTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                                                                   <  1:744763/91‑1 (MQ=255)

         aTTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                                                                   >  1:3041178/1‑91 (MQ=255)

          ttttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATg                                                                                  <  1:2455976/91‑1 (MQ=255)

          ttttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATg                                                                                  <  1:1108753/91‑1 (MQ=255)

          ttttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATg                                                                                  <  1:1108709/91‑1 (MQ=255)

              gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                                                                              >  1:1541860/1‑91 (MQ=255)

              gTATTATATACAACTTAAAATATTAACTCGTCCCATGGAAGTAGAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                                                                              <  1:4151557/91‑1 (MQ=255)

               tattatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATga                                                                             <  1:2736557/91‑1 (MQ=255)

               tattatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATga                                                                             >  1:2891900/1‑91 (MQ=255)

                attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgag                                                                            >  1:1931654/1‑91 (MQ=255)

                attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgag                                                                            >  1:1931638/1‑91 (MQ=255)

                 ttatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgagg                                                                           <  1:1411100/91‑1 (MQ=255)

                   atataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATgaggag                                                                         >  1:2639406/1‑91 (MQ=255)

                      taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                                                                      <  1:3335451/91‑1 (MQ=255)

                      taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                                                                      <  1:4118279/91‑1 (MQ=255)

                       aCAACTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGTGCGTTTTCATGTATGAGGAGAGGt                                                                     <  1:2036287/91‑1 (MQ=255)

                          aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                                                                  <  1:1101292/91‑1 (MQ=255)

                          aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                                                                  >  1:2049806/1‑91 (MQ=255)

                          aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                                                                  >  1:2049142/1‑91 (MQ=255)

                            ttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTa                                                                <  1:721114/91‑1 (MQ=255)

                            ttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTa                                                                <  1:3756460/91‑1 (MQ=255)

                               aaaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATgg                                                             <  1:87809/91‑1 (MQ=255)

                                aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc                                                            <  1:131694/91‑1 (MQ=255)

                                 atatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCa                                                           >  1:1012184/1‑91 (MQ=255)

                                 atatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCa                                                           >  1:3975438/1‑91 (MQ=255)

                                   atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaat                                                         <  1:934705‑M2/91‑36 (MQ=255)

                                   atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaa                                                         >  1:1683371/1‑91 (MQ=255)

                                   atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaa                                                         >  1:815003/1‑91 (MQ=255)

                                    ttAACTCGTCCCATGGAAGTAAAGCATATTTACGATGCTGTTATTTACCATGGGGCGTTCTGATGTATGAGGAGAGGTAATTATGGCaaaa                                                        >  1:3317183/1‑91 (MQ=255)

                                      aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa                                                      <  1:532467/91‑1 (MQ=255)

                                          cGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATg                                                  >  1:3652207/1‑91 (MQ=255)

                                            tCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGa                                                >  1:2468142/1‑91 (MQ=255)

                                             cccATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGAt                                               >  1:2686923/1‑91 (MQ=255)

                                             cccATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGAt                                               >  1:3022409/1‑91 (MQ=255)

                                               cATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATAc                                             <  1:3802742/91‑1 (MQ=255)

                                               cATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATAc                                             <  1:3802795/91‑1 (MQ=255)

                                               cATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATAc                                             <  1:1805151/91‑1 (MQ=255)

                                                aTGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtattt                                            <  1:1875844‑M2/91‑49 (MQ=255)

                                                aTGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACa                                            <  1:3494658/91‑1 (MQ=255)

                                                 tGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtattta                                           <  1:3779562‑M2/91‑50 (MQ=255)

                                                 tGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACaa                                           <  1:3494195/91‑1 (MQ=255)

                                                 tGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACaa                                           <  1:1452695/91‑1 (MQ=255)

                                                  ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          <  1:2671676/91‑1 (MQ=255)

                                                  ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          <  1:3807081/91‑1 (MQ=255)

                                                  ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          >  1:1680139/1‑91 (MQ=255)

                                                  ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          >  1:1427810/1‑91 (MQ=255)

                                                   gAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAtt                                         <  1:477972/91‑1 (MQ=255)

                                                   gAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAtt                                         <  1:477986/91‑1 (MQ=255)

                                                     aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGt                                       >  1:1986315/1‑91 (MQ=255)

                                                     aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGt                                       <  1:3431047/91‑1 (MQ=255)

                                                      gTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaacccg                                      <  1:3461141‑M2/91‑55 (MQ=255)

                                                       tAAAGCATATTTACTATGCTGTTATTTTCCATGGGAcgagttaatattttaaattgtatataatacaaaataagttacgtatttaacccgc                                     <  1:2652916‑M2/91‑56 (MQ=255)

                                                        aaaGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTc                                    >  1:2407351/1‑91 (MQ=255)

                                                        aaaGCATATTTACTATGCTGTTATTTTCCATGGGAcgagttaatattttaaattgtatataatacaaaataagttacgtatttaacccgcg                                    <  1:2768294‑M2/91‑57 (MQ=255)

                                                         aaGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCa                                   <  1:3121006/91‑1 (MQ=255)

                                                          aGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAt                                  <  1:1174704/91‑1 (MQ=255)

                                                          aGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAt                                  <  1:4126384/91‑1 (MQ=255)

                                                           gCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAtt                                 >  1:88073/1‑91 (MQ=255)

                                                           gCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAtt                                 >  1:88014/1‑91 (MQ=255)

                                                           gCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAtt                                 >  1:2173777/1‑91 (MQ=255)

                                                           gCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAtt                                 <  1:1363315/91‑1 (MQ=255)

                                                            cATATTTACTATGCTGTTATTTTCCATGGTGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTa                                <  1:3334516/91‑1 (MQ=255)

                                                                  tACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaaaa                          >  1:255687/1‑91 (MQ=255)

                                                                  tACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaaaa                          <  1:2233447/91‑1 (MQ=255)

                                                                     tATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                       <  1:1755006/91‑1 (MQ=255)

                                                                     tATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                       <  1:1753578/91‑1 (MQ=255)

                                                                     tATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                       <  1:1753406/91‑1 (MQ=255)

                                                                     tATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                       <  1:236887/91‑1 (MQ=255)

                                                                      aTGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAAcaca                      <  1:2291387/91‑1 (MQ=255)

                                                                      aTGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAAcaca                      >  1:3505513/1‑91 (MQ=255)

                                                                       tGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACag                     <  1:2758503/91‑1 (MQ=255)

                                                                       tGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACag                     <  1:3134844/91‑1 (MQ=255)

                                                                        gCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACaga                    >  1:144918/1‑91 (MQ=255)

                                                                         cTGTTATTTTCCATGGGGCGTTTTCATGAATGAGGAGAGGGAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACagag                   >  1:133100/1‑91 (MQ=255)

                                                                               ttttCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtg             <  1:214721/91‑1 (MQ=255)

                                                                               ttttCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtg             <  1:856319/91‑1 (MQ=255)

                                                                                tttCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtgt            <  1:657532/91‑1 (MQ=255)

                                                                                tttCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtgt            >  1:1330648/1‑91 (MQ=255)

                                                                                   ccATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGtt         >  1:1324466/1‑91 (MQ=255)

                                                                                   ccATGGGGCGTTATCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGtt         >  1:3174028/1‑91 (MQ=255)

                                                                                      tGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTccc      <  1:775508/91‑1 (MQ=255)

                                                                                      tGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTccc      >  1:2593174/1‑91 (MQ=255)

                                                                                       ggggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCt     >  1:1711118/1‑91 (MQ=255)

                                                                                       ggggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCt     <  1:1073932/91‑1 (MQ=255)

                                                                                       ggggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCt     <  1:1073780/91‑1 (MQ=255)

                                                                                        gggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTg    <  1:910548/91‑1 (MQ=255)

                                                                                          gCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGt  >  1:672802/1‑91 (MQ=255)

ACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGT  >  USA300TCH1516_ALE/1676745‑1676925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.