| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1683123 | 66 (0.670) | 6 (0.070) | 4/138 | NT | 9.8% | coding (135/699 nt) | USA300HOU_RS08385 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1683155 | 54 (0.640) | coding (103/699 nt) | USA300HOU_RS08385 | hypothetical protein | |||||
ACGTATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1683023‑1683123‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagccacctCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT < USA300TCH1516_ALE/1683155‑1683066 ACGTATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAA > 1:4065735/1‑91 GTATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAA < 1:2289972/91‑1 TATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAA > 1:102978/1‑91 TATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAA > 1:1265938/1‑91 ATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAG > 1:673956/1‑91 ATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAG > 1:1038959/1‑91 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC < 1:3886784/91‑1 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC > 1:3334755/1‑91 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC < 1:3253522/91‑1 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC < 1:2411945/91‑1 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC < 1:2411662/91‑1 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC < 1:2411661/91‑1 CATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCC < 1:1644482/91‑1 ATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCA > 1:1159617/1‑91 ATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCA < 1:2777602/91‑1 ATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCA > 1:2278679/1‑91 TCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCAC < 1:639255/91‑1 CATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACC > 1:1483460/1‑91 CATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACC < 1:117693/91‑1 CATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACC < 1:2058891/91‑1 ATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCT < 1:3158771/91‑1 TTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGG < 1:1981896/91‑1 TTAATTCTTCACTTATTTCTTTAAACGGTCGCTCAATTTCTTCAAAAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGG < 1:1378105/91‑1 TAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGT < 1:2594218/91‑1 TAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGT < 1:1010659/91‑1 AATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTG < 1:1086678/91‑1 ATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGG < 1:1589472/91‑1 AAAAGCCACCTCAAAAATCATCTACCGATAATCAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGA < 1:3553123/91‑1 AAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGA < 1:1956752/91‑1 AAAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGA < 1:1956726/91‑1 AAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAA > 1:3933493/1‑91 AAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAA > 1:3933415/1‑91 AAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAA < 1:3778346/91‑1 AAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAA > 1:3085119/1‑91 AAAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAA > 1:158206/1‑91 AAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAG > 1:686756/1‑91 AAGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAG > 1:3914575/1‑91 AGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGA > 1:1873239/1‑91 AGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGA > 1:692680/1‑91 AGCCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGA > 1:1987234/1‑91 CCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAAT > 1:264793/1‑91 CCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAAT > 1:68206/1‑91 CCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAAT < 1:3629392/91‑1 CCACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAAT < 1:3629509/91‑1 CACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATT > 1:1070743/1‑91 CACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATT > 1:1070764/1‑91 ACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTA < 1:3509917/91‑1 ACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTA < 1:941380/91‑1 ACCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTA < 1:941360/91‑1 CCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAA < 1:987402/91‑1 CCTCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAA < 1:3827698/91‑1 CTCAAAAAACAGCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAA < 1:3422214/91‑1 TCAAAAAACATCTACCGATAATGAACCANAANAAGGTGGCTTTTTTGAAGAAATTGAGCGNACGTTTAANGAAATAAGTGAAGAATTAAAT > 1:1339773/1‑91 TCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT > 1:248557/1‑91 TCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT > 1:2050970/1‑91 TCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT < 1:895204/91‑1 TCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT > 1:1735007/1‑91 TCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT > 1:1734679/1‑91 ACGTATCATCATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1683023‑1683123‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagccacctCAAAAAACATCTACCGATAATGAACCAAAAAAAGGTGGCTTTTTTGAAGAAATTGAGCGAACGTTTAAAGAAATAAGTGAAGAATTAAAT < USA300TCH1516_ALE/1683155‑1683066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |