| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1683123 | 66 (0.670) | 6 (0.070) | 4/138 | NT | 9.8% | coding (135/699 nt) | USA300HOU_RS08385 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1683155 | 54 (0.640) | coding (103/699 nt) | USA300HOU_RS08385 | hypothetical protein | |||||
Only 100 of 159 total aligned reads displayed.
ATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATA > USA300TCH1516_ALE/1683033‑1683213 | atatTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCT < 1:3158771‑M1/91‑1 (MQ=255) tataTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCtt < 1:3338335/91‑1 (MQ=255) tatTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCtt > 1:2478883/1‑91 (MQ=255) atTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCttt > 1:1005363/1‑91 (MQ=255) atTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTACACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCttt > 1:3584828/1‑91 (MQ=255) ttttCGTTTCGATGATTTCTTTTTTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCtttt > 1:2977586/1‑91 (MQ=255) tttcgtttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCttttt < 1:4126319/91‑1 (MQ=255) tcgtttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCttttttt > 1:2573391/1‑91 (MQ=255) cgtttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTg > 1:363266/1‑91 (MQ=255) cgtttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTg > 1:3548334/1‑91 (MQ=255) cgtttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTg > 1:521023/1‑91 (MQ=255) tttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGt < 1:794580/91‑1 (MQ=255) tttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGt > 1:1304699/1‑91 (MQ=255) tttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGt < 1:690161/91‑1 (MQ=255) ttcgATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGtt < 1:2439403/91‑1 (MQ=255) atgatTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCAtt > 1:2314512/1‑91 (MQ=255) atTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATc < 1:2189806/91‑1 (MQ=255) atTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATc < 1:3641054/91‑1 (MQ=255) tttcttttctTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCg > 1:2916960/1‑91 (MQ=255) cttttcttCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTa < 1:387109/91‑1 (MQ=255) cttttcttCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTa > 1:4052920/1‑91 (MQ=255) tttcttCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGa > 1:1257796/1‑91 (MQ=255) cttcttcATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGt > 1:1714346/1‑91 (MQ=255) ttcttcATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGtt > 1:523101/1‑91 (MQ=255) cATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTg < 1:179852/91‑1 (MQ=255) aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa > 1:248557‑M2/1‑90 (MQ=255) aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa > 1:1735007‑M2/1‑90 (MQ=255) aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa < 1:895204‑M2/91‑2 (MQ=255) aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa > 1:2050970‑M2/1‑90 (MQ=255) aTTTAATTCTTCACTTATTTCNTTAAACGTNCGCTCAATTTCTTCAAAAAAGCCACCTTNTTNTGGTTCATTATCGGTAGATGTTTTTTGa > 1:1339773‑M2/1‑90 (MQ=255) tttAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGCTGTTTTTTGag < 1:3422214‑M2/91‑3 (MQ=255) ttAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaagg < 1:1981896‑M1/91‑36 (MQ=255) tAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggt < 1:2594218‑M1/91‑37 (MQ=255) tAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggt < 1:1010659‑M1/91‑37 (MQ=255) tAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggt < 1:941360‑M2/91‑5 (MQ=255) aaTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtg < 1:1086678‑M1/91‑38 (MQ=255) aaTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtg > 1:1070764‑M2/1‑86 (MQ=255) aaTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtg > 1:1070743‑M2/1‑86 (MQ=255) aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtgg < 1:1589472‑M1/91‑39 (MQ=255) aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtgg > 1:68206‑M2/1‑85 (MQ=255) aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtgg > 1:264793‑M2/1‑85 (MQ=255) tcttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggct > 1:1987234‑M2/1‑83 (MQ=255) tcttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggct > 1:1873239‑M2/1‑83 (MQ=255) tcttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggct > 1:692680‑M2/1‑83 (MQ=255) cttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggctt > 1:686756‑M2/1‑82 (MQ=255) ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt < 1:3778346‑M2/91‑11 (MQ=255) ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt > 1:3933493‑M2/1‑81 (MQ=255) ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt > 1:3085119‑M2/1‑81 (MQ=255) tcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTGATTATCGGTAGATGATTTTTGaggtggctttt < 1:3553123‑M2/91‑12 (MQ=255) tcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggctttt < 1:1956726‑M2/91‑12 (MQ=255) cTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAt > 1:4065908/1‑91 (MQ=255) cTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAt < 1:3548532/91‑1 (MQ=255) tATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAttt > 1:676034/1‑91 (MQ=255) tATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAttt < 1:3563491/91‑1 (MQ=255) tAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATc < 1:3706458/91‑1 (MQ=255) aCGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCttt > 1:1170413/1‑91 (MQ=255) gTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTAt < 1:2932937/91‑1 (MQ=255) tCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGa < 1:1830124/91‑1 (MQ=255) cGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGAc > 1:280522/1‑91 (MQ=255) cGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGAc > 1:2722172/1‑91 (MQ=255) gCTCGATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGGTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACt < 1:3051882/91‑1 (MQ=255) cAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTAtt < 1:3918118/91‑1 (MQ=255) aTTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTAtttt < 1:2950044/91‑1 (MQ=255) ttcttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTcg > 1:2194042/1‑91 (MQ=255) ttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCgcgc > 1:147433/1‑91 (MQ=255) ttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCgcgc > 1:843477/1‑91 (MQ=255) tcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCa < 1:599924/91‑1 (MQ=255) cAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCAt < 1:2830895/91‑1 (MQ=255) aaaaGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtga < 1:1956752‑M1/91‑81 (MQ=255) aaaGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaa > 1:158206‑M1/1‑10 (MQ=255) aaaGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaa > 1:3933493‑M1/1‑10 (MQ=255) aaaGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaa > 1:3933415‑M1/1‑10 (MQ=255) aaGCCACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaag > 1:3914575‑M1/1‑9 (MQ=255) ctccACCTTTTATTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATagtagt < 1:3753359/89‑1 (MQ=255) aGCCACCTTTTTTTGGTTCATTATCAGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATagtagt < 1:3856939/91‑1 (MQ=255) gCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAgtagta > 1:1101284/1‑91 (MQ=255) gCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAgtagta > 1:3628059/1‑91 (MQ=255) gCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAgtagta > 1:128486/1‑91 (MQ=255) ccACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaat < 1:3629392‑M1/91‑86 (MQ=255) ccACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaat < 1:3629509‑M1/91‑86 (MQ=255) ccACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTaa > 1:1466664/1‑91 (MQ=255) cACCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatt > 1:1070743‑M1/1‑5 (MQ=255) cACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAAt > 1:3470893/1‑91 (MQ=255) cACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAAt < 1:3141878/91‑1 (MQ=255) aCCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatta < 1:3509917‑M1/91‑88 (MQ=255) aCCTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatta < 1:941380‑M1/91‑88 (MQ=255) aCCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatta < 1:2594218‑M2/91‑56 (MQ=255) aCCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATg > 1:326141/1‑91 (MQ=255) ccTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaa < 1:987402‑M1/91‑89 (MQ=255) ccTcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaa < 1:3827698‑M1/91‑89 (MQ=255) ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaccgtttaaagaaataagtgaagaattaa < 1:1378105‑M2/91‑57 (MQ=255) ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaa < 1:1981896‑M2/91‑57 (MQ=255) ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGa > 1:3170763/1‑91 (MQ=255) cttcttTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGAt < 1:3736388/91‑1 (MQ=255) cTcaaaaaacagctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaaa < 1:3422214‑M1/91‑90 (MQ=255) tcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaaat > 1:1734679‑M1/1‑1 (MQ=255) tcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaaat > 1:1735007‑M1/1‑1 (MQ=255) tcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaaat < 1:895204‑M1/91‑91 (MQ=255) tcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaaat > 1:2050970‑M1/1‑1 (MQ=255) tcaaaaaacatctaccgataatgaaccaaaaaaaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaaat > 1:248557‑M1/1‑1 (MQ=255) | ATATTTTCGTTTCGATGATTTCTTTTCTTCTTCATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATA > USA300TCH1516_ALE/1683033‑1683213 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |