BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1683123	66 (0.670)	6 (0.070)	4/138	NT	9.8%	coding (135/699 nt)	USA300HOU_RS08385	hypothetical protein
*	?	USA300TCH1516_ALE	= 1683155	54 (0.640)	6 (0.070)	4/138	NT	9.8%	coding (103/699 nt)	USA300HOU_RS08385	hypothetical protein

Only 100 of 102 total aligned reads displayed.

CATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTAGAAT  >  USA300TCH1516_ALE/1683065‑1683245

cATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTg                                                                                            <  1:179852/91‑1 (MQ=255)

cATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTg                                                                                            <  1:1797689/91‑1 (MQ=255)

 aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa                                                                                           <  1:895204‑M2/91‑2 (MQ=255)

 aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa                                                                                           >  1:248557‑M2/1‑90 (MQ=255)

 aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa                                                                                           >  1:2050970‑M2/1‑90 (MQ=255)

 aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa                                                                                           >  1:1735007‑M2/1‑90 (MQ=255)

 aTTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGa                                                                                           >  1:1734679‑M2/1‑90 (MQ=255)

 aTTTAATTCTTCACTTATTTCNTTAAACGTNCGCTCAATTTCTTCAAAAAAGCCACCTTNTTNTGGTTCATTATCGGTAGATGTTTTTTGa                                                                                           >  1:1339773‑M2/1‑90 (MQ=255)

  tttAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGCTGTTTTTTGag                                                                                          <  1:3422214‑M2/91‑3 (MQ=255)

   ttAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGagg                                                                                         <  1:3827698‑M2/91‑4 (MQ=255)

    tAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggt                                                                                        <  1:941380‑M2/91‑5 (MQ=255)

    tAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggt                                                                                        <  1:941360‑M2/91‑5 (MQ=255)

    tAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggt                                                                                        <  1:3509917‑M2/91‑5 (MQ=255)

     aaTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtg                                                                                       >  1:1070743‑M2/1‑86 (MQ=255)

     aaTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtg                                                                                       >  1:1070764‑M2/1‑86 (MQ=255)

      aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtgg                                                                                      >  1:264793‑M2/1‑85 (MQ=255)

      aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtgg                                                                                      <  1:3629509‑M2/91‑7 (MQ=255)

      aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtgg                                                                                      <  1:3629392‑M2/91‑7 (MQ=255)

      aTTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtgg                                                                                      >  1:68206‑M2/1‑85 (MQ=255)

        tcttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggct                                                                                    >  1:1873239‑M2/1‑83 (MQ=255)

        tcttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggct                                                                                    >  1:1987234‑M2/1‑83 (MQ=255)

        tcttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggct                                                                                    >  1:692680‑M2/1‑83 (MQ=255)

         cttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggctt                                                                                   >  1:3914575‑M2/1‑82 (MQ=255)

         cttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggctt                                                                                   >  1:686756‑M2/1‑82 (MQ=255)

          ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt                                                                                  >  1:158206‑M2/1‑81 (MQ=255)

          ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt                                                                                  >  1:3933493‑M2/1‑81 (MQ=255)

          ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt                                                                                  >  1:3085119‑M2/1‑81 (MQ=255)

          ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt                                                                                  >  1:3933415‑M2/1‑81 (MQ=255)

          ttcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttt                                                                                  <  1:3778346‑M2/91‑11 (MQ=255)

           tcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTGATTATCGGTAGATGATTTTTGaggtggctttt                                                                                 <  1:3553123‑M2/91‑12 (MQ=255)

           tcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggctttt                                                                                 <  1:1956752‑M2/91‑12 (MQ=255)

           tcACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggctttt                                                                                 <  1:1956726‑M2/91‑12 (MQ=255)

              cTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAt                                                                              <  1:3548532/91‑1 (MQ=255)

              cTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAt                                                                              >  1:4065908/1‑91 (MQ=255)

                tATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAttt                                                                            >  1:676034/1‑91 (MQ=255)

                tATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGAttt                                                                            <  1:3563491/91‑1 (MQ=255)

                   ttCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGt                                                                         >  1:3650624/1‑91 (MQ=255)

                    tCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTc                                                                        >  1:3159464/1‑91 (MQ=255)

                        tAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATc                                                                    <  1:2294640/91‑1 (MQ=255)

                        tAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATc                                                                    <  1:3706458/91‑1 (MQ=255)

                          aaCGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCtt                                                                  >  1:1165292/1‑91 (MQ=255)

                          aaCGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCtt                                                                  >  1:3737411/1‑91 (MQ=255)

                           aCGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCttt                                                                 >  1:1170413/1‑91 (MQ=255)

                             gTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTAt                                                               <  1:2932937/91‑1 (MQ=255)

                               tCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGa                                                             <  1:1830124/91‑1 (MQ=255)

                                cGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGAc                                                            >  1:2722172/1‑91 (MQ=255)

                                cGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGAc                                                            >  1:280522/1‑91 (MQ=255)

                                  cTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTa                                                          <  1:2014740/91‑1 (MQ=255)

                                    cAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTAtt                                                        <  1:3918118/91‑1 (MQ=255)

                                     aaTTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTAttt                                                       <  1:257590/91‑1 (MQ=255)

                                      aTTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTAtttt                                                      <  1:2950044/91‑1 (MQ=255)

                                      aTTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTAtttt                                                      <  1:3417662/91‑1 (MQ=255)

                                        ttcttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTcg                                                    >  1:2194042/1‑91 (MQ=255)

                                         tcttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTcgc                                                   <  1:845589/91‑1 (MQ=255)

                                           ttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCgcgc                                                 >  1:147405/1‑91 (MQ=255)

                                           ttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCgcgc                                                 >  1:147433/1‑91 (MQ=255)

                                           ttcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCgcgc                                                 >  1:843477/1‑91 (MQ=255)

                                            tcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCa                                                <  1:599924/91‑1 (MQ=255)

                                            tcAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCa                                                <  1:4089153/91‑1 (MQ=255)

                                             cAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCAt                                               <  1:2830913/91‑1 (MQ=255)

                                             cAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCAt                                               <  1:2830895/91‑1 (MQ=255)

                                                   ctccACCTTTTATTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATagtagt                                         <  1:3753359/89‑1 (MQ=255)

                                                   aGCCACCTTTTTTTGGTTCATTATCAGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATagtagt                                         <  1:3856939/91‑1 (MQ=255)

                                                    gCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAgtagta                                        >  1:3628059/1‑91 (MQ=255)

                                                    gCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAgtagta                                        >  1:1101284/1‑91 (MQ=255)

                                                    gCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAgtagta                                        >  1:128486/1‑91 (MQ=255)

                                                     ccACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaat                                       <  1:1589472‑M2/91‑54 (MQ=255)

                                                     ccACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTaa                                       >  1:1466664/1‑91 (MQ=255)

                                                      cACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatt                                      <  1:1086678‑M2/91‑55 (MQ=255)

                                                      cACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAAt                                      >  1:3470893/1‑91 (MQ=255)

                                                      cACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAAt                                      <  1:3141878/91‑1 (MQ=255)

                                                      cACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAAt                                      >  1:2566079/1‑91 (MQ=255)

                                                       aCCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatta                                     <  1:1010659‑M2/91‑56 (MQ=255)

                                                       aCCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaatta                                     <  1:2594218‑M2/91‑56 (MQ=255)

                                                       aCCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATg                                     >  1:326141/1‑91 (MQ=255)

                                                        ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaccgtttaaagaaataagtgaagaattaa                                    <  1:1378105‑M2/91‑57 (MQ=255)

                                                        ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGaggtggcttttttgaagaaattgagcgaacgtttaaagaaataagtgaagaattaa                                    <  1:1981896‑M2/91‑57 (MQ=255)

                                                        ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGa                                    >  1:3170763/1‑91 (MQ=255)

                                                        ccTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGa                                    >  1:2079292/1‑91 (MQ=255)

                                                         cttcttTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGAt                                   <  1:3736388/91‑1 (MQ=255)

                                                             ttttGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGaa                               <  1:1541081/91‑1 (MQ=255)

                                                                tGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATg                            >  1:2874522/1‑91 (MQ=255)

                                                                 ggTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGa                           <  1:538148/91‑1 (MQ=255)

                                                                       ttATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTg                     <  1:3911750/91‑1 (MQ=255)

                                                                         aTCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGat                   <  1:1443810/91‑1 (MQ=255)

                                                                          tCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGata                  <  1:2304408/91‑1 (MQ=255)

                                                                          tCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGata                  <  1:736549/91‑1 (MQ=255)

                                                                           cGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGatat                 >  1:1656207/1‑91 (MQ=255)

                                                                            ggTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATg                <  1:2289309/91‑1 (MQ=255)

                                                                            ggTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATg                >  1:1802152/1‑91 (MQ=255)

                                                                            ggTACATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGATTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATg                >  1:3282103/1‑91 (MQ=255)

                                                                             gTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTGTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGa               <  1:3400069/91‑1 (MQ=255)

                                                                             gTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGa               <  1:765512/91‑1 (MQ=255)

                                                                             gTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGa               >  1:16597/1‑91 (MQ=255)

                                                                                gATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACaa            <  1:860477/91‑1 (MQ=255)

                                                                                      ttttGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTa      >  1:932909/1‑91 (MQ=255)

                                                                                      ttttGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTa      >  1:3411847/1‑91 (MQ=255)

                                                                                        ttGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTAGa    >  1:3362369/1‑91 (MQ=255)

                                                                                          gAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTAGAAt  >  1:632957/1‑91 (MQ=255)

                                                                                          gAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTAGAAt  >  1:258538/1‑91 (MQ=255)

CATTTAATTCTTCACTTATTTCTTTAAACGTTCGCTCAATTTCTTCAAAAAAGCCACCTTTTTTTGGTTCATTATCGGTAGATGTTTTTTGAGGTGGCTTTTGATTTTGTCTATCTTTATGACTATTTTCGCGCATAGTAGTAATGATAGAAATGATCACTGATATGACAAAAATTAGAAT  >  USA300TCH1516_ALE/1683065‑1683245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.