| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1685779 = | 98 (1.000) | 7 (0.080) | 5/140 | NT | 7.8% | coding (1245/1347 nt) | mtaB | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB |
| ? | USA300TCH1516_ALE | 1685820 = | 80 (0.930) | coding (1204/1347 nt) | mtaB | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB | |||||
TGAGGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1685878‑1685779‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAT > USA300TCH1516_ALE/1685820‑1685908 TGAGGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGT < 1:2044703/91‑1TGAGGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGT < 1:201578/91‑1 AGGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCA < 1:617978/91‑1 AGGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCA > 1:241110/1‑91 GGAACATGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAA < 1:1198052/91‑1 GGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAA < 1:86977/91‑1 GGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAA < 1:4041218/91‑1 GGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAA < 1:1949599/91‑1 GGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAA < 1:147071/91‑1 GAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAA > 1:3022512/1‑91 CAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTG > 1:215581/1‑91 CAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTG > 1:2340531/1‑91 CAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTG > 1:2858510/1‑91 CAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTG > 1:1949874/1‑91 GGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTA > 1:3479956/1‑91 GGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTA > 1:3356378/1‑91 ATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATGATTATCTGCATATCCAACTAATGTACCTTCTGT > 1:3403056/1‑91 ATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGT > 1:3404086/1‑91 GAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGT > 1:1253213/1‑91 CAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTG > 1:8411/1‑91 CAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTG > 1:8410/1‑91 ATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTT > 1:3262183/1‑91 GAAGGTGACGAATCACTCATAGGTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTC > 1:390585/1‑91 TCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTT < 1:2202557/91‑1 AATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGAT < 1:1128546/91‑1 ATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATC < 1:2326760/91‑1 ATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATC < 1:2052055/91‑1 GTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAA < 1:2945353/91‑1 GTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAA < 1:534631/91‑1 GTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAA < 1:2236961/91‑1 TACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAT > 1:1829448/1‑91 TACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAT > 1:796553/1‑91 TGAGGAACAGGGTGACACAGAAGGTACATTAGTTGGATATGCAGATAATTATATGAAAGTACAATTTGAAGGTGACGAATCACTCATAGGTCAAATTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1685878‑1685779‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAT > USA300TCH1516_ALE/1685820‑1685908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |