BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1685779 =	98 (1.000)	7 (0.080)	5/140	NT	7.8%	coding (1245/1347 nt)	mtaB	Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB
*	?	USA300TCH1516_ALE	1685820 =	80 (0.930)	7 (0.080)	5/140	NT	7.8%	coding (1204/1347 nt)	mtaB	Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB

Only 100 of 131 total aligned reads displayed.

TGCTTGCCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAT  >  USA300TCH1516_ALE/1685731‑1685908

tgcttgcCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACt                                                                                         >  1:2171532/1‑91 (MQ=255)

tgcttgcCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACt                                                                                         <  1:4111187/91‑1 (MQ=255)

 gcttgcCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACtt                                                                                        <  1:1377821/91‑1 (MQ=255)

  cttgcCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACttt                                                                                       <  1:2102239/91‑1 (MQ=255)

  cttgcCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACttt                                                                                       <  1:1919860/91‑1 (MQ=255)

  cttgcCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACttt                                                                                       <  1:2102150/91‑1 (MQ=255)

   acacagaaggtacattagttggatatgcagataattatatgaaagTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTc                                                                                      >  1:1253213‑M1/46‑91 (MQ=255)

     acagaaggtacattagttggatatgcagataattatatgaaagTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCat                                                                                    >  1:3404086‑M1/44‑91 (MQ=255)

     acagaaggtacattagttggatatgcagataatcatatgaaagTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCat                                                                                    >  1:3403056‑M1/44‑91 (MQ=255)

        cTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCAtata                                                                                 <  1:758922/91‑1 (MQ=255)

        cTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCAtata                                                                                 <  1:584849/91‑1 (MQ=255)

        cTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCAtata                                                                                 <  1:3451746/91‑1 (MQ=255)

          tCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAAt                                                                               <  1:2906890/91‑1 (MQ=255)

          tCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAAt                                                                               <  1:3111599/91‑1 (MQ=255)

          tCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAAt                                                                               <  1:2591363/91‑1 (MQ=255)

            aTTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTa                                                                             <  1:1659053/91‑1 (MQ=255)

            aTTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTa                                                                             <  1:1659302/91‑1 (MQ=255)

                aaTGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTg                                                                         <  1:1322366/91‑1 (MQ=255)

                aaTGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTg                                                                         <  1:454077/91‑1 (MQ=255)

                aaTGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTg                                                                         <  1:669690/91‑1 (MQ=255)

                 aTGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGc                                                                        >  1:3030303/1‑91 (MQ=255)

                  tGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCa                                                                       >  1:3437908/1‑91 (MQ=255)

                     aTAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCatat                                                                    <  1:457973/91‑1 (MQ=255)

                       aaTTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATcc                                                                  <  1:3720402/91‑1 (MQ=255)

                         tttGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCaa                                                                >  1:1852589/1‑91 (MQ=255)

                            gcttgcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTa                                                             >  1:2336074/1‑91 (MQ=255)

                             cttgcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTaa                                                            <  1:436900/91‑1 (MQ=255)

                             cttgcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTaa                                                            <  1:441166/91‑1 (MQ=255)

                             cttgcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTaa                                                            <  1:495053/91‑1 (MQ=255)

                               tgcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATg                                                          <  1:3340087/91‑1 (MQ=255)

                               tgcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATg                                                          >  1:2680196/1‑91 (MQ=255)

                                gcGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGt                                                         >  1:3466173/1‑91 (MQ=255)

                                 cGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTa                                                        <  1:2769582/91‑1 (MQ=255)

                                  gTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTAc                                                       <  1:1734571/91‑1 (MQ=255)

                                  gTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTAc                                                       >  1:2886725/1‑91 (MQ=255)

                                  gTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTAc                                                       <  1:1016514/91‑1 (MQ=255)

                                    aaTTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCt                                                     <  1:1167730/91‑1 (MQ=255)

                                    aaTTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCt                                                     >  1:2412164/1‑91 (MQ=255)

                                      ttttAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTc                                                   <  1:3762365/91‑1 (MQ=255)

                                      ttttAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTc                                                   <  1:2371882/91‑1 (MQ=255)

                                      ttttAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTc                                                   <  1:2618086/91‑1 (MQ=255)

                                        ttAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCtg                                                 <  1:2133373/91‑1 (MQ=255)

                                         atgaaagtacaatttgaaggtgacgaatcactcataggtcaaattgtaCTTTCATATGATTATCTGCATATCCAACTAATGTACCTTCtgt                                                >  1:3403056‑M2/49‑91 (MQ=255)

                                          aaCTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCtgtg                                               >  1:1922989/1‑91 (MQ=255)

                                          aaCTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCtgtg                                               <  1:1082569/91‑1 (MQ=255)

                                           gaaagtacaatttgaaggtgacgaatcactcataggtcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTgtgt                                              >  1:1253213‑M2/47‑91 (MQ=255)

                                           aCTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTgtgt                                              <  1:1039563/91‑1 (MQ=255)

                                           aCTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTgtgt                                              >  1:2653005/1‑91 (MQ=255)

                                            cTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTc                                             >  1:2997482/1‑91 (MQ=255)

                                            cTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTc                                             >  1:3926470/1‑91 (MQ=255)

                                            cTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTc                                             >  1:3926461/1‑91 (MQ=255)

                                               ttACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCAcc                                          >  1:1595648/1‑91 (MQ=255)

                                               ttACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCAcc                                          <  1:795425/91‑1 (MQ=255)

                                                TACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCAccc                                         >  1:3479956‑M1/1‑91 (MQ=255)

                                                  caatttgaaggtgacgaatcactcataggtcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTg                                       >  1:8410‑M2/40‑91 (MQ=255)

                                                  caatttgaaggtgacgaatcactcataggtcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTg                                       >  1:8411‑M2/40‑91 (MQ=255)

                                                  CAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTg                                       >  1:2858510‑M1/1‑91 (MQ=255)

                                                  CAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTg                                       >  1:2340531‑M1/1‑91 (MQ=255)

                                                    atttgaaggtgacgaatcactcataggtcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGtt                                     >  1:3262183‑M2/38‑91 (MQ=255)

                                                     TTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTc                                    >  1:3022512‑M1/1‑91 (MQ=255)

                                                      TTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTcc                                   <  1:4041218‑M1/91‑1 (MQ=255)

                                                      TTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTcc                                   <  1:86977‑M1/91‑1 (MQ=255)

                                                      TTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTcc                                   <  1:1949599‑M1/91‑1 (MQ=255)

                                                      TTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTcc                                   <  1:147071‑M1/91‑1 (MQ=255)

                                                      TTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCATGTTcc                                   <  1:1198052‑M1/91‑1 (MQ=255)

                                                       TGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCt                                  <  1:617978‑M1/91‑1 (MQ=255)

                                                       TGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCt                                  >  1:241110‑M1/1‑91 (MQ=255)

                                                        gaaggtgacgaatcactcataggtcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTc                                 >  1:390585‑M2/34‑91 (MQ=255)

                                                         ACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCa                                <  1:201578‑M1/91‑1 (MQ=255)

                                                         ACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCa                                <  1:2044703‑M1/91‑1 (MQ=255)

                                                          ccTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAg                               >  1:1844676/1‑91 (MQ=255)

                                                          ccTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAg                               >  1:1869870/1‑91 (MQ=255)

                                                           cTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAgg                              <  1:1662680/91‑1 (MQ=255)

                                                            tATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGa                             >  1:168681/1‑91 (MQ=255)

                                                            tATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGa                             <  1:1885137/91‑1 (MQ=255)

                                                            tATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGa                             >  1:2231055/1‑91 (MQ=255)

                                                                 gTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTAc                        >  1:2339684/1‑91 (MQ=255)

                                                                 gTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTAc                        >  1:2337126/1‑91 (MQ=255)

                                                                 gTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTAc                        >  1:3079499/1‑91 (MQ=255)

                                                                  tGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACt                       >  1:3715763/1‑91 (MQ=255)

                                                                     ttCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCa                    <  1:1166433/91‑1 (MQ=255)

                                                                      tCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCaa                   <  1:406263/91‑1 (MQ=255)

                                                                      tCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCaa                   >  1:1008084/1‑91 (MQ=255)

                                                                      tCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCaa                   >  1:3286371/1‑91 (MQ=255)

                                                                       cGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAg                  >  1:1619446/1‑91 (MQ=255)

                                                                       cGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAg                  <  1:64418/91‑1 (MQ=255)

                                                                        gTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGc                 <  1:1175432/91‑1 (MQ=255)

                                                                         tCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGca                <  1:3313908/91‑1 (MQ=255)

                                                                          cACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGcac               >  1:2694193/1‑91 (MQ=255)

                                                                          cACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGcac               >  1:2437298/1‑91 (MQ=255)

                                                                          cACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGcac               >  1:1667996/1‑91 (MQ=255)

                                                                           aCCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGcaca              >  1:2372466/1‑91 (MQ=255)

                                                                              ttCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCt           <  1:1716676/91‑1 (MQ=255)

                                                                               tcaaattgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCtt          <  1:2202557‑M2/81‑1 (MQ=255)

                                                                                   attgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATc      <  1:2052055‑M2/85‑1 (MQ=255)

                                                                                   attgtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATc      <  1:2326760‑M2/85‑1 (MQ=255)

                                                                                      gtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCaaa   <  1:534631‑M2/88‑1 (MQ=255)

                                                                                      gtaCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCaaa   <  1:2945353‑M2/88‑1 (MQ=255)

                                                                                       taCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAt  >  1:796553‑M2/3‑91 (MQ=255)

                                                                                       taCTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAt  >  1:1829448‑M2/3‑91 (MQ=255)

TGCTTGCCCTTCATTTAATGGATAATTTGCTTGCGTAATTTTAACTTTTACAATTTGACCTATGAGTGATTCGTCACCTTCAAATTGTACTTTCATATAATTATCTGCATATCCAACTAATGTACCTTCTGTGTCACCCTGTTCCTCAGGAATTACTTCAAGCACATCTTGATCAAAT  >  USA300TCH1516_ALE/1685731‑1685908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.