| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1702257 = | 112 (1.140) | 17 (0.200) | 9/138 | NT | 16.5% | intergenic (‑1/+48) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase |
| ? | USA300TCH1516_ALE | 1702302 = | 75 (0.880) | intergenic (‑46/+3) | comEA/tylM1 | ComE operon protein 1/dTDP‑3‑amino‑3,6‑dideoxy‑alpha‑D‑glucopyranose N,N‑dimethyltransferase | |||||
TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1702357‑1702257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > USA300TCH1516_ALE/1702302‑1702391 TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGG < 1:663250/91‑1TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGG > 1:394014/1‑91 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA < 1:1769491/91‑1 AGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGA < 1:3905290/91‑1 GATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAG > 1:4000476/1‑91 GATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAG > 1:2288926/1‑91 GATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAG < 1:3894755/91‑1 ATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGT < 1:904350/91‑1 TGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTG < 1:772837/91‑1 GAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTATAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGG < 1:3486649/91‑1 GAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGG < 1:2265339/91‑1 ACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTT > 1:2486785/1‑91 ACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTT > 1:2767127/1‑91 TAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTA > 1:1569281/1‑91 AAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTT > 1:3815607/1‑91 AAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTC > 1:130828/1‑91 AAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTC > 1:1644517/1‑91 AAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATG > 1:731560/1‑91 AAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATG > 1:438586/1‑91 AAACCACCCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATG > 1:3618421/1‑91 CACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCA > 1:3388693/1‑91 CACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCA > 1:3388963/1‑91 ACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCAT > 1:834576/1‑91 CTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATC > 1:3148815/1‑91 CTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATC > 1:472564/1‑91 CTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATC > 1:3932170/1‑91 TCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCT > 1:1049611/1‑91 TCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCT > 1:3664767/1‑91 CGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTA > 1:494768/1‑91 CAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATT > 1:3941413/1‑91 CAGACGTGTATAAAGTTGAGGAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATT > 1:1857118/1‑91 GAGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAA < 1:2727495/91‑1 AGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC < 1:2358391/91‑1 AGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC < 1:2358355/91‑1 AGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC > 1:3744828/1‑91 AGTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAAC < 1:3522143/91‑1 GTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACA < 1:4050014/91‑1 GTGGTTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACA < 1:3641710/91‑1 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT > 1:4107756/1‑91 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT < 1:2889195/91‑1 TTTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTT > 1:534043/1‑91 TTTACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTT > 1:2658766/1‑91 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA < 1:1930575/91‑1 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > 1:2901145/1‑91 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA < 1:2464619/91‑1 ACTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA < 1:2465183/91‑1 TAGATGAACATAATGAAGATGCAGAAAGATTGTTTTTCATTGCGAAAAAATAAAAGTAAAACCACTCGCTCAGACGTGTATAAAGTTGAGGAGTGGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1702357‑1702257‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagtggttttaCTTTTATTTTTTCGCAATGAAAAACAATCTTTCTGCATCTTCATTATGTTCATCTATATTAAAATCAGTAAATGTTTCAACATGTTTAAA > USA300TCH1516_ALE/1702302‑1702391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |